Jatropha curcas (Barbados nut): 105629451
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Entry
105629451 CDS
T03922
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC105629451
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105629451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105629451
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105629451
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105629451
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105629451
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
105629451
NCBI-ProteinID:
XP_037497860
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MEMESTRRSFDRSREPGLKKPRLADQQPNLNGRPFSQRPTAALPPPSAAASARFRVNSDE
TQSNDSSRGGAYQPQSLPYQELVSQYKTALAELTFNSKPIIANLTIIAGENLHAAKAIAA
TVCANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRHVDPSVHASMR
HLFGTWKGVFPPQSLQMIEKELGFGSGAGSGVNGSSSGAATSRTDPRRPQHSVHVNPKYL
EIQRLQQSSRAKGTANDPTVPVSNSTEDVERPDRPAVIGAGRPWVDPPVKMPNIQRSHKE
IASEPVPGKKISAIYGELEYSSDITRNPSLGIGRSSLRVAEQGHEKSWYGAGNSVAETIS
GQKNGFSIKHGFPNFSTSKSPNVDLHLQSTQSIVTKSSSTISPSWKNSEEEEFMWDMHSR
LSEQDALSNNSRKDHWTPDVSEKLEFENQLRKPQSAQEVMSRFDRETASDSLSTEQKEQV
SFGHHLSSPWRLKESQSTDGLIISGTSSINTSHAEGYSAALGGLPLNSSSTVARMSVRPQ
IGTSGSGLLANTSLGSAGTLGQKRFQSLGSGSPSGQSPMRQHSPSPSIPVRYPHQQLQNS
VDQDLPQLQSLIRPDFKAHQLSGNLLKNTNVQLANLQKLQPEELPTSSPSLPSFQQTRQN
PISQPRQADSKQSEHSGQIQKPHLPLVSKVGSPSTSGSSAPDHSTPLRAETSGQSSTSSL
LAAVMNSGILSNIGTDGLTSRSFQDIGKNSSQLKVQPPLPSGPPPSQITSSDLRVASAFA
PQSPDNACASSSVSHRKKELPPLPSGLPPSSVQASNAGDKVSNPISNLLSSLVAKGLISA
SKSDTSPPLQSQTSTQSLTKKPSITNSSTTTTSSLPESSAIPHSSTSDEESLPKPDVKSS
VGLPEPTSTEIKSLIGLEFKSDVIRELHPPVISALFDDLPHQCSICGLKLKLKERLDRHL
EWHTWQKHEPDGIHRFLRRWYADSGDWITRKAELPFGVESSIFVDEFGKTMEENEPMVPA
DEDQCVCVLCGDLFEDYYSHERKTWMFKAAVHLTFPSGDGDTGSENENVDGPIVHANCIS
GSSFYDLGLASGIKMKKDG
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagtacccgtagatccttcgatagatcaagggagccaggcttgaagaaa
cctcgattggccgatcagcaaccaaaccttaatggtcgtccttttagtcagaggccaact
gcagcactacctccaccatcggcggcggcttctgcgaggtttagggttaacagtgatgag
actcagagcaatgattcgagccgtggcggcgcgtatcagccgcaatcactgccatatcag
gagctcgtgagtcagtataagacagctttggcggagctgactttcaattcgaagccgata
atcgctaacttgactataattgctggcgaaaatctccatgcagcgaaggcgattgctgct
actgtctgcgctaacattcttgaggttcccagcgagcaaaagcttccatcgctttatctt
ttagacagcattgtaaagaatattgggagggattacataaaatactttgctgcccgacta
cctgaggtattttgcaaggcatacaggcatgttgatccttctgtacatgcaagtatgcgg
catctttttggaacctggaaaggagtcttccctcctcagtcacttcagatgattgagaag
gaacttggctttggttctggagctggttctggagtaaatggttcatcatcaggtgctgca
acatctaggactgatccacgacgtccacaacatagcgttcatgttaatcccaagtacttg
gaaatacagcgccttcagcagtcaagcagggcaaaaggaacggcaaacgacccaactgtt
cctgtctcaaactcaactgaggatgtggagaggccagatagaccagctgttattggtgct
gggcgcccatgggtggaccctcctgttaaaatgcctaacattcaacgttctcataaagaa
atagcaagtgaacctgttcctgggaagaaaattagtgctatatatggagaacttgaatat
agctctgatatcacaaggaacccgagcttgggaattggaagatctagtcttagggttgct
gagcagggacatgaaaaatcttggtatggagctggcaacagtgttgcagaaacaatatct
ggccaaaaaaatggtttcagtataaagcatggttttccaaatttctcaacatccaaatct
cccaatgttgatttgcatctacaatcaacacagagcattgtgactaaaagcagcagcaca
atatctcctagctggaagaattctgaggaagaagaatttatgtgggatatgcactctagg
ttatcagaacaagatgctctctctaacaactccaggaaagatcattggactcctgatgtt
tcagaaaaattggagtttgagaatcaactcagaaaaccacaaagtgcacaagaggttatg
tcaaggtttgatagagagactgcctctgattcgttatccactgagcagaaagaacaggtt
tcttttgggcatcatttgtcctcaccatggcggttgaaagagtcccaatcaacagatggg
ctgataatttctggcacttcttctattaatacaagtcatgctgaaggctattctgctgca
cttggtgggttgcctttgaattcaagttccactgtggccagaatgtcagttcgacctcaa
attggaacctcaggctccggtttattggcaaacacatcattaggatctgctggaaccttg
gggcagaaaagatttcagtctctaggatctggatcaccatctggacagtcacccatgcgc
caacattcaccctcaccttcaattccagtacgttatccacatcaacaattgcaaaattca
gtcgaccaggatctcccacaattgcagtcattgattcgtcctgatttcaaggcacatcag
ttgtcaggaaatttactgaagaatacgaatgttcagcttgctaacttgcaaaaactacaa
cctgaagagttgccaacatcatctccttcattaccttcttttcaacaaacccgccagaat
cctatttcacagccacgacaagcagactcgaagcagtctgaacactctgggcagattcaa
aagccacaccttcctctggtttccaaagttggtagtccatcaacttcaggaagttctgca
ccagatcattcaactccacttcgtgcagaaacttcaggacaatcaagcacaagcagtttg
ttggctgctgttatgaatagtggaattctctctaatataggtactgatggccttactagt
cgaagttttcaggatattggtaaaaattcctcgcagttaaaggttcaacctcctcttccc
agtggtcctcccccttcccaaattacatcttctgatctgagagttgcatcagcatttgct
cctcagtctcccgataatgcatgtgctagctcaagtgtttctcataggaaaaaagagctg
ccgccgctgccttctggtcttccaccttcatctgtacaagcttcaaatgcaggagataag
gtctcgaaccccatatcaaacctgttgagctcattagttgccaagggtttaatatcagcc
tcaaagtcagatacatctcctcccttgcaatctcaaacgtctacccaatcactgacaaag
aaaccaagcattactaactctagcaccacaactacttcctctcttccagagtcttctgct
attcctcattcatcaacctcagatgaagaatctttgcccaaacctgatgtcaaaagctcc
gttggactgccggaacccacttcaacagagataaaaagtctcataggattggagtttaag
tcagatgtaatacgggaattacatccacctgttataagtgcactctttgatgaccttcca
catcagtgcagcatttgtggtcttaaacttaagctcaaagaaaggcttgataggcacttg
gagtggcatacttggcagaagcatgaaccagatggtatacataggtttttgaggagatgg
tatgcagattcaggggactggattaccagaaaggcagaacttccttttggagtcgagtct
tccattttcgtggatgagtttggaaagacaatggaggagaatgaacctatggttcccgca
gatgaagatcaatgtgtgtgtgttttgtgtggtgatctttttgaagattactatagtcat
gaaaggaagacatggatgttcaaagcagcagtgcacttgacatttccttccggagatggt
gatacagggagtgagaatgagaatgttgatggtcccatcgtgcatgccaattgtatatca
ggaagttcattttatgacttgggactggcaagtggtattaaaatgaaaaaggatggatga
DBGET
integrated database retrieval system
