Jatropha curcas (Barbados nut): 105629923
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Entry
105629923 CDS
T03922
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105629923
03015 mRNA surveillance pathway
105629923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105629923
03041 Spliceosome [BR:
jcu03041
]
105629923
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105629923
Spliceosome [BR:
jcu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
105629923
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
105629923
NCBI-ProteinID:
XP_012066962
LinkDB
All DBs
Position
Unknown
AA seq
895 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDMRKVKMDVIRPWIANRVTELL
GFEDEVLINFIYGLLDAKEVNGKEVQISLTGFMEKNTGKFMKELWTLLLSAQKNESGVPQ
QFLDAKEEETRKKQAEMDRITNEIQKKKEREGKELDRERLKKMDGGAETKANVAAVDPTS
KYMQKGSTGDPKDEKETENRNGVRGRSRSSQSPQSADRSYSPPRGSPSRNSRSFSNSRSH
SGDRRKSRSLSSSPEARRRSISSDRVYRSPEKRSVSPHWRYSSRNSLSPSRRRSLYLRQR
SPSPVRHRLHSPYRRRSPSPVRRRSPSLVRRRRSRSPVRRRRSRSPLRRRRSPSPLRHRR
SPSPIRRRRSPSPLRRRRSPSPMRRRSPSPVRRRSPSPVQRRSPSPVRRRSPPVRRRSPS
LLRQRYQRSPSTPRRRSISPRHRSPIPPRRRSPVPPRRRSPSPYGSSCPSPVQHRSPSPV
RRSSKERRRSPVQSPGERFSMRDKSSPVPRRPPNSLRSPQGDAKDRKDLRYRPLSLSPSP
ERSPSPSLERTRYSSQDRRLTSPYESAVRQLRVRRNRSSSQSASPVRQKRAQITCDESLS
PTQKPREQKPHQGSPESSKEDGDADNVRDYKSRYSQKQSMHSSIKSKQKDSPVKVHSKDE
HSPEREVGRLVTESRSRLDIRETRKKDQEIKSEKGSRKGDYLVTPEEERHKDIQMSYAGE
VQKSDQKKHSRTNDIKDSSRRHKSETTQMLVEKADHSNGGGAFDSGSDDSDKHTSKQKRK
HKRSHREEVASDDDYSYDSDIEEKKEAKRRRKEEKKLRKEEKRRRREERRRRKEERRAEN
LRLKDLSDVNSSDDEQRKDSHPSDNEDSHSEQKKLEIELRRKALESLKAKKGINH
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgggtttttccggggtacttctgctgatcaagacactcgattctctaacaag
caagccaagttgttgaaatcgcagaagtttgctccagaattggaacatctggtggacatg
aggaaagtgaaaatggatgtgattagaccatggattgctaatagggtgacagagcttctt
gggtttgaagatgaagttcttataaacttcatttatggtcttcttgatgcaaaggaagtg
aatggaaaggaggttcaaatatcacttactggatttatggagaagaacactggaaagttt
atgaaagagctttggacacttcttctcagtgcacagaagaatgaaagtggtgttcctcag
cagttcttggatgccaaagaagaggaaacccgcaaaaagcaggcagagatggataggata
acaaatgaaattcagaagaagaaagagagggagggtaaagaacttgaccgagagagattg
aagaagatggacggaggtgctgaaacaaaggccaacgttgctgctgtggatccaacctca
aaatatatgcagaagggttcaactggtgatccgaaggatgagaaagaaactgaaaatagg
aatggagtgagaggaagaagcaggtcttctcaatctccccagtcagccgatcgctcatat
tctccccctaggggctcgccttcacggaacagcaggtcattttcaaattcaagaagtcat
tcaggtgatagacgcaagtcaaggagtctgtcaagctcaccagaagcacgaaggcgatcc
atttcatctgatagggtttatcgctcaccagaaaaaagatctgtttcacctcattggagg
tattcatctaggaactccctttctccttcaaggaggagatcattgtatttgaggcaaaga
tcaccatctccagtgcgacacagattgcattctccatatcgacgcagatcaccttcacca
gttcgccgtagatctccttcacttgttcggcgccgtcgatcacgttcaccagttcgacgc
cgtcgatcacgttcaccccttcgacgccgtcgatcgccttcaccccttcgacaccgaaga
tcgccctcccccattcgacgacgacgatcgccctccccccttcgacgacgacgatcaccg
tcaccaatgaggcgtagatcaccgtcaccagtgaggcgtagatcaccgtcaccagtgcag
cgtagatctccctcacctgtgcggcgaagatctccccctgttcgacgtagatcaccctct
ctccttcgccagaggtatcaaaggtctccatccactccacgtcggaggtctatatctcca
aggcacaggtcaccaattcctccccgcaggaggtcaccggttcctccccgtaggagatct
ccttcaccttatggatcgagttgtccatcgcctgtccagcataggtctccttcacctgta
aggagatcttcaaaagaacgtaggaggtcacctgttcaatcccctggtgaaagatttagt
atgcgggataaatcatctcctgtgccacgtagaccccctaattctttgaggtcaccacaa
ggagatgcaaaagatcgcaaggatttgcgttatagaccgttatctttgtctccttcacca
gagaggtcaccatctccatcacttgaaaggacgaggtattctagtcaggacaggaggttg
acaagtccttatgagagcgctgtgaggcaactaagagtgagaagaaataggtcttctagt
caatctgctagccctgtgaggcaaaaaagggcgcaaatcacatgtgatgaaagcttaagc
cctacacagaaaccaagggagcagaaacctcatcaaggaagtcctgaatctagcaaagag
gacggagatgctgataatgttcgagattacaagtccaggtattcgcagaaacaatccatg
cattcttctatcaagagtaagcagaaagattctcctgtcaaggtccattcaaaggatgag
cattctcctgaaagagaggttggtcgtctggttactgaatctcggagccgtcttgatatt
agggaaacaagaaagaaagaccaggaaataaagagtgagaaaggttctcggaagggggat
tatctggtaactcctgaggaggagagacacaaggacatacaaatgtcttatgcaggagag
gtccaaaaatctgatcagaaaaagcattcacgtacaaacgacattaaggacagcagtaga
cgccataaatcagaaactacgcagatgttggttgagaaggctgatcacagtaatggtggt
ggtgcatttgattctggttctgacgatagtgacaagcacacaagtaagcaaaagcgaaag
cataaaaggtcgcacagggaagaagtggcttcagatgatgattacagctatgactctgat
attgaagaaaagaaagaggctaagaggaggaggaaggaagaaaagaaactgcggaaggaa
gaaaaacgtcggaggcgtgaggaacggcgtcgtagaaaggaagaacggcgtgcagagaac
ctcagattgaaggatctaagtgatgttaattcttctgatgatgaacagaggaaggattct
catccaagtgacaatgaagactcacattctgagcagaagaaacttgagattgaattgagg
aggaaggctcttgaatcacttaaagcaaagaagggcattaatcactaa
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