Jatropha curcas (Barbados nut): 105630324
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Entry
105630324 CDS
T03922
Name
(RefSeq) probable CCR4-associated factor 1 homolog 6
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105630324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105630324
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105630324
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105630324
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105630324
NCBI-ProteinID:
XP_012067515
UniProt:
A0A067L410
LinkDB
All DBs
Position
Unknown
AA seq
274 aa
AA seq
DB search
MSLLLKGDSIQIREVWNDNLEEEFALIREIVDDFPYIAMDTEFPGIVLRPVGNFKNSNDY
HYQTLKDNVDMLKMIQLGLTFSDEQGNLPTCGTGKFCIWQFNFREFNVNEDVFANDSIEL
LRQSGIDFKKNNENGIDAMQFGELLMSSGIVLNDSVHWVTFHSGYDFGYLLKLLTCQNLP
DTQVGFFNLINMYFPTLYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDSLLTA
CTFRKLKENFFSGSLEKYAGVLYGLGVENGQNTH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgctgctaaaaggcgattctatccagattcgcgaggtgtggaatgacaatctt
gaagaagaatttgctcttatccgtgaaattgttgatgattttccatatatagctatggac
acggagttcccaggcatcgtcttgcgccctgtgggcaattttaagaatagcaatgactac
cattatcagaccttgaaggataacgttgacatgttgaagatgattcaattgggtcttaca
ttttcagatgagcaagggaatttacccacatgtggaactggcaagttttgcatttggcag
ttcaattttcgtgaattcaatgtgaatgaggatgtgtttgcaaacgactcaattgaactt
ttgcgccaaagtgggattgattttaagaagaataatgagaatggtatcgatgcaatgcaa
tttggtgagctcttgatgtcatcagggattgtattgaatgacagcgtacattgggtgact
ttccacagtggctatgattttggctacttgctcaagctcttgacatgccagaatttgcct
gacacacaagtgggattctttaacttgatcaatatgtacttcccaaccctatatgatatc
aagcatttgatgaagttttgcaatagtcttcacggcgggttgaacaagcttgcagaactg
ttggaagtggagagagttgggatatgccatcaagcaggttctgatagtttgctcacagct
tgtacattcaggaaattaaaggagaatttctttagtggctccttggaaaagtatgccggt
gtgttatatggtttaggtgttgagaatggacagaatactcattga
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