Jatropha curcas (Barbados nut): 105630767
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Entry
105630767 CDS
T03922
Name
(RefSeq) uncharacterized protein LOC105630767
KO
K06100
symplekin
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105630767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105630767
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105630767
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105630767
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105630767
U7-dependent histone pre-mRNA processing factors
105630767
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
105630767
NCBI-ProteinID:
XP_037495674
LinkDB
All DBs
Position
Unknown
AA seq
1197 aa
AA seq
DB search
MLKFKDAVFAVAVEPGSVGTKLLSLKFLETYILLFTADTSDSEKLVTEGSRRLFNVSWLA
GGHPVLDPVALMSDADRTLGILLDLLQIPSSCPGPLTIAVVNCLAAIARKRPVHYGTVLS
ALLDFNPKFEMSNGCHTASIQYSLRTAFLGFLRCTHPVIFESRDRLLRALRSMNAGDAAD
QVIRQVDKMIKNSERASRESRFSRDDQVSNQLPVLGDQLRKRSMPLDNEELANGHEVSSK
RIRYVSNISSTIPVPNDSEDDSVATNGVSSSAALLDSDLTPAEQMIAMIGALLAEGERGA
ESLEILISNIHPDLLADIVITNMKHLPKNPPPLTRSGNSPVIRQIGSLSSPAQVVAPSAP
TNSFSSVSSAHLTFSAVVTNNLSLSDTSTINNFPVDSKRDPRRDPRRLDPRRTATAAGIA
SMPVADDTVATEPEFDGSVSLSNALSLAATSVENPPAVLISKSENDDKPLESKLVPDNQL
SLKEEISSKPEEIFPTSEVKASSDHTISPPHNVEEDFVASKLSDIEVAHGADSASLMELD
PHSPTVSNASMPEETCQELPQLPLYIELTEEQQRNLRKLAVERIVESHKHLPGSDCSMTR
MALLARLVAQIDVDDDVVVMLQNHITVDYRQQKGHELVLHILYHLHSLMIVDSVGNSSYA
SVVYEKFLLGVAKSLLDAFPASDKSFSRLLGEVPLLPESALKLLDNLCYSDVLDSHGKEV
RDGERVTQGLGAVWGLILGRPNNRQACLDIALKCAIHSQDDIRAKAIRLVANKLYQLNYI
AENIEQFATKMLLSAVDQHTSNTELSQSGSTDQREGEVGSQETSVSGSQVSDTVNCENNS
MRSAQPAVQNMSMISLSEAHRLISLFFALCTQRPILLQLVFDIYGRAPKTVKQAVHRHIP
ILIRALGSSYSELLRIISDPPEGCENLLMLVLQKLTQETTPSADLISTVKHLYETKLKDA
TILIPILSSLSKNEVLPIFPRLVGLPIEKFQMALAHILQGSAHTGPALTPAEVLVAIHDI
SPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFP
TLVDFVMEILSKLVSRQIWKMPKLWVGFLKCVSQTRPHSFRVLLQLPPPVLESALNKHSS
LRSPLAAYASQPSIKTSLPRSTLVVLGLVNESQMQQPHVASLHPSDTSSSVRGANLT
NT seq
3594 nt
NT seq
+upstream
nt +downstream
nt
atgcttaagttcaaggatgcagtgtttgcagttgcagtggagcctggttctgttggtaca
aagttgctgtcattgaaatttttggaaacatatatattgctttttacagctgacaccagt
gattctgaaaaacttgttactgaaggaagtaggcgcttatttaatgtttcttggctggct
ggtggccatcctgttttggatccagtcgcacttatgtcagatgcagaccggactcttggc
attctattagacttattacagattcccagcagttgtcctggtccattgactattgctgtt
gtcaattgtcttgcagctatagcaaggaagaggccagtccactatggcactgttctttct
gcattgcttgattttaacccaaaatttgagatgtcgaatgggtgtcatactgccagcatc
cagtattccttgagaactgcctttttgggattcctgcggtgtacacatccggtcatattt
gagtcaagagatagattgcttcgggctttacgaagtatgaatgctggggatgctgctgac
caagttatccgtcaagtagataaaatgattaaaaatagtgagcgtgcatcacgtgaatcc
aggttcagcagggatgatcaagtatcaaaccagctgccagttttgggagatcagctaaga
aaaaggtccatgcctctggataatgaagagctagctaatggtcatgaggtgtcatccaag
agaattcgttatgtttctaacatctcgtcaacaatacccgtgccaaatgattctgaggat
gattctgtagcaaccaatggagtatcctctagtgctgctttattagatagtgatttgact
cctgcagaacaaatgatagctatgattggtgcattgcttgctgaaggagagagaggagct
gaatcacttgaaattctcatttcaaatattcatcctgatctgcttgctgatattgtcatc
actaatatgaagcatttgcctaagaaccccccacctttgacgaggtctggaaactcgcca
gtaattcgtcaaattggttctctaagcagtccagctcaagttgtggcaccatctgctcct
acaaattctttttcttcagtttccagtgcacacttaacattttctgcagtagtcacaaac
aatttgtcactttctgatacatccactatcaataattttcctgtcgattctaaacgtgat
ccaagaagggatccacgtcgcctggatccacgacgtacagcaacagctgctggaatagca
tccatgcctgttgcagatgatactgttgccacagaacctgaatttgatggttctgtttct
ttgagtaatgctctttcactggctgcaacatctgttgagaaccctcctgcggttctgata
tcaaaaagtgaaaatgatgacaaacctctagaaagtaaactggtgcctgacaatcaatta
agtttgaaagaggagatttccagcaaacctgaggaaattttccccacttcagaagtcaag
gcttcttcagatcatactatttctcctccccacaatgttgaggaggactttgttgcctcg
aagttatcagatattgaagtggcacatggggctgattctgcatctttgatggaattagat
ccacattctccaactgtttcaaatgcatctatgcctgaagaaacctgtcaggagttacct
cagcttccactttacattgaactaactgaagaacaacaaagaaatttgagaaaattggct
gttgaacgaattgttgaatctcacaagcatctgcctggatctgattgtagcatgacacgc
atggctttacttgctcgattggttgctcagattgatgtagatgatgatgttgttgtgatg
ctgcaaaaccatattactgtggattaccgacagcagaaggggcatgagcttgtattgcac
atcttgtaccatctgcattctctcatgattgtagattcagttggaaattcctcatatgct
tctgttgtgtatgagaaattcctcttgggagtggccaaatctctattagatgcttttcct
gcttcagacaagtcctttagtagacttcttggagaagttccacttttgccagagtcagct
ttgaaattgttagataatctctgttatagtgatgttttggattcccatggaaaagaggtc
cgtgatggtgagcgtgttactcaaggccttggagctgtgtggggtttgattttgggccgt
ccaaataatcggcaagcatgcttagatatagctttgaagtgtgctattcattcacaagac
gacattcgagcaaaagctatccggctggtagcaaacaaactttatcaactgaactatata
gcagaaaatattgagcaatttgcaacaaaaatgttgctgtcagctgtggatcaacatact
tcaaatacagagctttcacagtcaggttccactgaccaaagagaaggggaggttggaagc
caggagacatcagtcagtggttctcaagtctcagatactgtaaactgtgaaaataactcc
atgaggagtgcacaaccagctgtccaaaatatgtccatgatatcattatctgaagctcat
cgactaatttctttattttttgctttgtgtacacagagacctattcttcttcaacttgtt
tttgacatatatgggcgagcaccaaaaacagtaaagcaggctgttcatcgccatatccct
attcttatcagggccctgggatcttcttattctgaactgcttcggataatatctgatcca
ccggaaggatgtgaaaatcttctgatgcttgtgctgcaaaaattgacccaagagacaacg
ccatctgctgatctgatttctactgtgaaacatttatacgaaactaagctaaaggatgct
actatacttattccaattttatcttcactctccaagaatgaggttttacccatattccct
cggttagttggccttccaatagagaaattccaaatggcacttgctcacattttacagggt
tcagctcatacaggtccagctttaacacctgcagaagttttggttgccatccatgacatc
agtcctgagaaagatggccttgcactaaaaaagataacagatgcctgctcagcttgtttt
gaacaacgtacagttttcacacagcaggttttggcaaaggccctaaatcagatggttgat
caaactcctttgcctctactcttcatgcgaacagtaattcaggcaatcgatgcatttcct
accctggttgattttgttatggagatactctccaaacttgtgagtagacagatctggaaa
atgccaaagttgtgggttggattcttgaaatgtgtctctcaaaccaggccacattctttc
cgtgtattattgcagttaccacctccagtacttgaaagtgccctgaacaagcactctagt
ctcagaagccccttagctgcttatgccagccaaccaagtatcaaaacttcactacctaga
tcaacattagtggtacttggacttgtcaatgaatcgcaaatgcagcaacctcatgtggct
tctttacacccttctgacacaagttcatctgttcgtggagcaaatcttacctga
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integrated database retrieval system
