Jatropha curcas (Barbados nut): 105630810
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Entry
105630810 CDS
T03922
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105630810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105630810
Spliceosome [BR:
jcu03041
]
Complex A
U1 snRNP components
U1 related factors
105630810
Complex B
105630810
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF1707
Motif
Other DBs
NCBI-GeneID:
105630810
NCBI-ProteinID:
XP_012068170
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MDNGSQSSGAQFRSVVPAQQGQPYIPQQFRPVGQGMPSNVGMLPGQSQTLQFSQPMQQLP
QWPNQPGHATASQAVPLPYAHPNRLLTSGPPQLQQTAPPVSNHATGLGMSGVPLSSPYAF
APSSFGQPQNNAIASTQFQPMPQMHAHLVPPGGQPWLPAGSNGQSLATAVQPTGQQPSVS
SSSDPAVNAPNVGQLASSDWQEHTAADGRRYYYNKKTKQSSWEKPFELMTAIERADASTV
WKEFTTSEGKKYYYNKVTKQSKWSIPEELKLAREHAQQAVGQGTQSEVDAASHASSTVAV
TSGETSNIAISASSSSSTLFGATSSPIPVTPVSNPAVVVSGSSTLLVAQSSIANTAGVQP
AVVTTTLLPTAVSGSTGVTATLVNAKMLTTGFDNLAPQVAANSVDGASMLESEQEMKQRM
EVAGKSDADVLEEKAADDEPLVFATKLEAKNAFKALLESANVQSDWTWEQAMREIVNDKR
YGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKRAREEFTKMLEESNELTSSMKWSKAV
SLFESDERFKAVEKARDRQDLFNNYMEELARKEKEKAEEDHRRNKAEYKKFLESCDFIKV
NSRWQKVQDRLEDDERCLRLEKVDRLVVFQDYIRDLEKEEEKQKMIQKEQRRRAERKNRD
AFRKLLEDHVADGSLTAKTHWLDYCLKVKDLPQYHAVATNTSGSTPKDLFEDVAEELEKQ
YHDDKTRIKDAMKSGKITMTSAWTFEDFKAAISDDIGSPPISDINLKLLYDELLERAKEK
EEKEAKKRQRLADDLTKLLHSFKEITASSTWEDSKQLIEESQEYRSIGEESVSREIFEEY
VAHLQEKAKEKERKREEEKQAKKEKEREEKEKRKERERKEKEKEKEREREKGKERIKKDE
TDSENVDATDSYGHKEDKKREKDKDRKHRRRHQSGADDISSDRDEKEESKKSRRHGSDRK
KSRKHSYTPESDSESRHKRHKRDHRDSSRRNGGYEELEDGELGEDGEIQ
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggacaatggttctcagtcctctggtgcacagtttcgatcagtagttcctgcacagcag
ggacagccgtacattccccaacagttccggcctgttggacaaggaatgccttcaaatgtt
gggatgctgcctggtcaaagtcagacactgcagttttctcaaccgatgcagcagttgcca
caatggccaaatcaacctggccatgctacagcatcgcaagctgtgccattgccatatgct
catccaaataggctgcttacatcgggcccaccacagttgcagcaaactgcccccccagta
agtaatcatgcaactgggttgggcatgtctggagttcctctctcttcaccatatgctttt
gcaccatcttcttttggccaaccacaaaataatgccattgcatcaacccagttccagcca
atgcctcaaatgcatgcacatcttgtacctccaggtggtcaaccttggttgcctgctgga
agcaacggtcaatcacttgctacagcagtacagccaactggtcaacagccttctgtatct
tcttcctcagatccagcagtaaatgctcctaacgttggtcaactggcttcatctgactgg
caagagcatacagctgctgatgggaggagatattactacaacaagaaaacaaaacaatct
agctgggagaagccctttgaactgatgacagcaattgagcgagctgatgcatcgactgtc
tggaaggagttcaccacttcagagggaaaaaagtattactataacaaggttacaaagcag
tctaagtggtcaattcctgaggaattgaagttagctcgtgaacatgctcagcaagcagtt
ggccagggaacccaatcagaagttgatgcagcttctcatgcctcatctactgttgccgtt
acttcgggcgaaacatctaacattgctatttcagctagctccagctcttcaacattattt
ggagcaacttcaagcccaattccagtcacacctgtttctaatcctgctgtggtagtttct
ggttcatcgaccctgcttgttgcacaatcttccatagcaaatactgctggagtccaacct
gctgtggtaaccactactcttttacccactgctgtttcaggaagtactggtgttactgct
actttggttaatgccaagatgttaacaactggctttgataatcttgcacctcaagttgct
gcaaattctgtagatggagcatccatgctggagtctgagcaggaaatgaaacaacggatg
gaggttgctggaaaaagtgatgcagatgtgttagaagagaaagctgcagatgatgaacct
ttagtatttgcaactaaactggaggcaaaaaatgcattcaaagctctcctggaatctgct
aacgttcagtctgactggacttgggagcaggcaatgagagagattgtcaatgacaagaga
tatggtgctctaaaaacactgggggaacggaagcaagcttttaatgagtacttgggtcaa
aggaaaaaaatagaagctgaggagaggcgaatgaggcagaaaagagctcgggaagaattc
accaagatgttggaagagtcgaacgagctcacatcatccatgaaatggagcaaagctgta
agtttgttcgaaagtgatgagcggtttaaggctgttgagaaagccagagatcggcaagac
ctttttaacaactacatggaggaactcgcaaggaaggaaaaggaaaaggctgaagaagac
cacaggcgaaataaagcagaatataaaaagtttctggaatcctgcgacttcattaaggtg
aatagccggtggcagaaggttcaagaccgcttggaggatgatgaaaggtgtttgcgtctt
gaaaaagtggaccgcttagtcgttttccaggactatattcgggacctggagaaggaagaa
gagaaacagaagatgatacagaaggaacaacggagacgagctgaacgcaaaaaccgtgat
gcgtttcgcaaactgctggaagaccatgttgctgatggctcccttacagcaaaaactcac
tggcttgactattgtttgaaggttaaagatttgcctcaatatcatgctgttgcaacaaat
acctctggttcaactccaaaggatttgtttgaggatgttgctgaagaattagagaaacag
taccatgatgacaaaactcgtataaaagatgcaatgaaatcagggaagatcaccatgacg
tcagcatggacatttgaagactttaaagctgctatttctgatgatattggttccccacca
atatcagatatcaacttaaagcttttatatgatgagctacttgagagggccaaggagaag
gaggaaaaagaagctaaaaaacgacaacgtcttgctgatgatcttactaaactgttgcac
agttttaaggaaataactgcatcttcaacttgggaggattccaaacaacttattgaagaa
agccaggagtacagatcaattggggaggagagtgttagcagggagatttttgaggaatat
gtggcacacttgcaggaaaaagctaaagaaaaagaacgtaagcgtgaggaggaaaagcag
gccaaaaaggagaaagagagggaggaaaaagagaaacggaaagagagagagagaaaggag
aaggagaaggagaaggaacgtgaaagggaaaaagggaaggagcgaatcaaaaaggatgaa
acggacagtgaaaatgttgatgcaacagacagttatggccataaagaggataaaaaaaga
gaaaaagacaaagatagaaagcaccggcgacgccatcaaagtggtgctgatgatataagt
tccgacagggatgagaaggaggaatctaaaaaatcacggagacatggcagtgaccgtaag
aaatctagaaagcattcatacacacctgaatctgatagtgaaagccgacataaaaggcac
aagagagaccaccgggatagttcccgtagaaatggtggctatgaagagctagaagatggt
gagctcggcgaggatggagaaatccagtag
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