Jatropha curcas (Barbados nut): 105630976
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Entry
105630976 CDS
T03922
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105630976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105630976
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105630976
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105630976
mRNA degradation factors
3'-5' decay
Ski complex
105630976
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
Ski2_N
MTR4-like_stalk
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
105630976
NCBI-ProteinID:
XP_012068365
UniProt:
A0A067LDJ7
LinkDB
All DBs
Position
Unknown
AA seq
1338 aa
AA seq
DB search
MDRIQATNELAFRVGFSGYSGHLRVEPLSTVERPNPVKSLPDFILPPAFPRETYESIKEH
IEEEYLFPRLDTDEFSAEKAGRQWDFDWFERAKVLQEPSLPRSIVVPTWELPFRRKKSGS
EQGIWEPNSVQVDVSELTVGAQDSSPLPRIVGPAKDFVRGSINNRPFHPGGLDNSQSLER
VLPAGATNGEWVHELLNGGPAQSIPPSLKRGLDLGDLKVYPSAWNVYKDQSPISTTPEEK
LNELSIQFDDLFKKAWEEDIVPEYVGDGHLSEEESPEFDADVSKVNVPGNVSETESSVLD
EILSAESGALTSKSNGTSEGGGHKPKEAWALSGNNEWIAERFHELVPDMALNFSFELDSF
QKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFC
GKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGV
VWEEVIIMLPRHINIILLSATVPNTVEFADWIGRTKQKKIQVTGTTRRPVPLEHCLFFSG
ELYKICENETFIPQGLKAAKDAHKKKNTSAVGIGSAAMREGAQGQKREFSNRNKQNKHSG
PQNFGSGGNQQSASGQNNWGSRRSEASLLLQLVNRLSKKSLLPVVIFCFSKNRCDKSADS
MSGTDLTSKSEKSEIRVFCDKAFSRLKGSDRNLPQIVRVQSLLRRGIGVHHAGLLPIVKE
VVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAG
RRGLDKIGTVVVMCRDEIPEESDLRLVIVGSATRLESQFRLTYIMILHLLRVEELKVEDM
LKRSFAEFHAQKKLPETQQILRRKLAQPTKAIECIKGEPAIEEYYDMYLEAEEYGNQISE
AVMQSPAAQHFLTPGRVVVVKSHSAQDHLLGVVVKGPSATMKQYIVLFLKPDLPSSMPVS
ELQDKKSGDSPQAYLLMPKSKRGGEEYFYSAATRKGSGAINIKLPYQGSAAGVSYEVRGM
DTKDFLCICNSKIKIDQVGLLEDVSNSAFSKTVQQLSELKSDGNKYPPALDPLKDLKMKD
WNLVEAYKKWTSLLQKMAVNKCHGCIKLEEHIALARELKKHKDEIDNLRFQMSDEALQQM
PDFQGRMDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDNLEPEEAVAI
MSAFVFQQRKTSEPSLTPKLSEAKKRLYDTAIRLGELQVNCKLQISPEEYAQENLKFGLV
EVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIMGNSALYKKMEAAS
NSIKRDIVFAASLYITGV
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaatccaagcaacaaacgaactcgctttccgggtcggcttctccggctacagt
ggccatctcagagtcgagcctctgtccaccgtagagcgccccaatcccgtcaagtcgctt
cctgattttatccttccccctgccttccctagggagacatatgaatcaataaaggagcac
atagaagaggaatatctatttccaaggttagatactgatgaattttcagcagaaaaagct
ggaaggcagtgggattttgactggtttgagagggcaaaagttctacaggagccttcattg
ccacgatccattgtggttccaacatgggagttaccttttagaagaaaaaaatcaggatca
gaacaaggaatatgggaaccaaattcagtacaggtggatgtctcagaattaactgttgga
gctcaagattctagtcctttgccacggattgttggacctgcaaaggactttgtgagaggg
agcattaacaaccgcccttttcatccaggaggtttagataattctcaatctctggagaga
gttctacctgctggtgctactaatggtgaatgggtgcatgaactgctgaatggtggccca
gctcaatccattcctccaagccttaagagaggattagatcttggagatcttaaggtgtac
cctagcgcatggaatgtttacaaggatcaaagtccaattagtaccacaccagaggaaaag
ttgaatgagttgtcgatacagtttgatgacttgttcaagaaggcctgggaggaggatatt
gttccagaatatgtgggagatggtcatttatcagaagaggagtctccagaattcgatgct
gatgtcagcaaggttaatgtgcctggaaatgtgtccgagactgaatcgtctgtgttggat
gagattttgtctgctgaatcaggtgcattgacatcaaaatctaatggaactagtgaaggt
ggtggccacaagccgaaagaggcctgggctcttagtggcaataatgaatggattgcagag
cgcttccatgaactagtccctgatatggcacttaatttttcttttgaactggattcattc
caaaaagaggctatatattatttggaaaagggagactctgtttttgtggcagctcatacc
tcagctggaaagacagttgtggcagaatatgcttttgctttagcatcaaaacactgtact
agagctgtctatactgctcccattaaaacaatcagcaaccagaagtatcgggatttttgt
gggaaattcgatgttggccttctcactggagatgttagcttgaggccagaggcttcttgt
ctcatcatgaccactgaaatattgaggtcaatgctttaccgaggtgctgatattataaga
gacattgaatgggtcatatttgatgaagttcattatgtcaatgatgctgaaagaggtgtt
gtttgggaagaagttattatcatgcttccaaggcatataaatattatcctcctctcagcc
acggtaccgaacacagttgaatttgcagactggattggtcggacaaaacaaaagaaaatc
caagttactggaactacaagaaggcccgtccccttggagcattgtctctttttttctgga
gaactttacaaaatatgtgagaatgaaacttttatacctcagggtttgaaagctgccaag
gatgcacacaagaaaaagaatacaagtgcagttggtattggatctgcagcaatgcgggag
ggggctcagggtcaaaagcgtgaattttctaatcgtaacaaacagaataagcattctggt
ccacaaaattttgggagtggggggaatcaacaaagtgcaagtggtcaaaataactggggg
tcaaggaggtcagaggcatcactattgttgcagcttgtcaacagactatcaaagaaatct
ctattacctgtagttatattttgtttctcaaagaatcggtgtgataaatcagcagatagt
atgtctggaactgacctcactagcaaatctgagaagagtgagatccgagttttctgtgat
aaagcattttcacgattaaagggatctgaccggaatttaccacagattgtcagagttcag
agccttcttcgtagaggaattggcgtacatcacgcaggacttcttccaattgttaaggaa
gtggttgagatgcttttttgccgtggagtcattaaggtactcttttcaacagagacattt
gccatgggtgtcaatgcccctgctaggacggttgtatttgatactttaaggaagtttgat
ggcaaggaatttagacaattacttcctggggaatatactcaaatggcaggtcgtgctggc
agaagaggacttgacaaaattggtacagttgtcgtgatgtgccgtgatgagatacctgaa
gagagcgatttgagacttgttatagttggaagtgctacgaggcttgaatctcaatttcga
ttgacttatattatgatcttacatctcctccgtgtagaggaactgaaggtggaggacatg
ttgaaaagaagttttgctgagtttcatgctcaaaagaaacttcctgaaacacagcaaatt
ctaaggcgaaagcttgctcagcctaccaaagctattgaatgtattaaaggcgaaccagca
attgaagagtactacgacatgtacttggaagccgaggaatatgggaatcagatatcagaa
gcagttatgcagtcccctgctgcccaacacttccttactcctggaagagtggtggttgtg
aagtcacactcagcacaagaccacttgcttggagtagttgtgaaaggaccttctgccact
atgaagcaatacatagttttatttctcaaacctgacttgccatcatcaatgccagtctct
gagctgcaagataagaagagtggtgatagcccacaagcttatttgcttatgccaaaatcg
aagcgtggtggagaagagtacttctattctgctgctacacgtaaaggatcaggtgcaatc
aacataaaattaccataccaaggcagtgccgctggtgtcagttatgaagttagaggaatg
gataccaaagatttcttatgcatatgcaatagtaaaattaagattgaccaagttggactt
cttgaggatgttagcaacagtgctttctctaagacagtccagcagttgtcagaactgaaa
tctgatggaaataagtaccctcctgccttagatccactgaaagatctgaagatgaaagat
tggaatcttgtggaggcatacaaaaagtggactagcctgttgcaaaagatggcagtgaat
aaatgtcatggttgtataaaattggaggagcacattgccttggcaagagagctgaagaag
cataaagatgaaattgataacctaagatttcaaatgtcagatgaagcactgcaacagatg
ccagactttcagggcaggatggatgttctaaaggaaattggttgtatcgatgctgacctc
gttgttcaaattaaaggccgagttgcttgtgagatgaattcaggggaggagttgatatgc
acagagtgtttatttgagaatcaacttgataacctggaaccagaagaagctgtggcaata
atgtcagcctttgtgtttcagcagaggaaaacttctgagccttctctaactcccaaacta
tctgaagctaaaaagagactctatgatacagcaataaggcttggagagcttcaagtcaac
tgcaaactacagataagccctgaagagtatgcacaggaaaatctgaagttcggtcttgta
gaagtagtttacgagtgggcaaagggaactccatttgctgatatctgtgagcttactgat
gttcctgaaggcttgatagtgcgaaccattgtcagactggatgagacatgtcgcgagttt
agaaatgctgctgctattatgggtaattctgcactctacaagaaaatggaagctgcatcc
aattcgataaaacgtgacatagtttttgcagctagcttatacattacgggagtataa
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integrated database retrieval system
