KEGG   Jatropha curcas (Barbados nut): 105631223
Entry
105631223         CDS       T03922                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105631223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jcu03021]
    105631223
Enzymes [BR:jcu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105631223
Transcription machinery [BR:jcu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105631223
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 105631223
NCBI-ProteinID: XP_020533849
LinkDB
Position
Unknown
AA seq 2006 aa
MQVSLPLQLTQTLGTEQNAQYTAHILNLYVANKAMEENVQFTILDGEVVGIRFGLATPKE
ISTASVSGCSINHSSQLTNPYLGLPLEFGKCQSCGTSEAGKCEGHFGYIELPIPIYHPSH
ISELKRLLSLLCLKCLKLKTNKFQAKSNGVAERLFSCCEEASQISVKEIKTTDGALFLQL
KLPSRMRLNDGFWSFLDRYGFHYGGDDTIRSLLPCEVMEMLKRIPQDTRKKLARKGYFPQ
EGYIMRYLPVPPNCLSVPDISDGVSIMSSDLSISMLKKVLKQVEIIKSSRSGSPNFESHE
VEAIDLQSAVDQYLQVRGTAKGSRDVESRFGIHKESNDSSTKAWLEKMRTLFIRKGSGFS
SRSVITGDAYKRVNEIGIPFEIAQRITFEERVSVHNVKYLQELVDNKLCMTYRDGSSTYS
LRDGSKGHTFLRPGQVVHRRIMDGDTVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC
GPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKSMF
KAYFLDRAAAQQLAMFVSFSLPQPTLWKVPYSDPIWTVLQILQTALPSQFDCTGERYFIS
KGDIIKIDFSRDVVQSVINEIVISIFFEKGPDAVFKFFNSLQPLLMENLFSEGFSVCLED
LYISRAVIESIHKDFKVISPLLSQLRSTYNELVELQLENHIRQVKLRVAEFIVRSSSIGD
LIDYKSDSAMTKVVQQIGFLGLQISDRGKFYSKTLVEDMVSHFERKYPSEVVEYPSAQYG
LIQSCFFHGLDPYEEMVHSISTREVIVRSSRGLSEPGTLFKNLMAILRDVVICYDGTVRN
VCSNSIIQFEYGVKAGIKAQSLFPAGEPVGVLAATAMSNPAYKAVLDSTPSSNSSWELMK
EILLCRVNFKNDLTDRRIILYLNDCGCGRNYCQEKAAYKVKNHLQKVILKDIANHFMIEY
KRQHTIADVGLAGHIHLDKMKLENLKVSMEVIHQKCTETVNFFRKKKKLALFFKRIEVSA
SQCCSFQESCADEWSGSPCLTFFWQDSDIRIERISNLFADMICPVLLETVIKGDHRISNA
NITWISPDTTTWIRNPSRTQKGELALDVVIEKSAVKQSGDAWRIVLDSCLPVLHLIDTTR
SIPYAIKQIQELLGVSCAFDQAVQRLSTSVTIVAKGVLKEHLILLANSMTCAGNLVGFNS
GGYKSLSRSLDVQVPFTDATLFTPRKCFERAAEKCHVDTLSSIVASCSWGKNVAVGTGSR
FDVLWDKKEACLDQEGSIDVYEFLNMVRCSANGEESTACLGADVDDLMLDDGMDDWNLSP
EHNFGSDKPTFEDRAEFQNCLDNQPADWEKASYAVNGSSSGGNWGGDKNMETDKENSWSG
WGRNAAETQNALSTKAHEESDKSNSWDTAGGWQAQANGKAENNVAETDSWSGWGTRKTES
SDVPAKKVQEESEHSIGWDTKAAWQTNISGGTPKSVPEPDSWSGWETRKNEVPDDHGRKA
QEETGRPGDHDAGAAWGRRAEVDDNSWGKPKSPQVSLSWGTPKEPVNAGSLRGWDLPKAG
GSNGSEIQPQWGKSKPPEGSHGWGSSNEPVKAAGWNQPNAGGSDATKRQQQWEKPKSPEA
SHGWGPSKEPVKAAGWDLENAGGGDGSERQQQWGKSKSSEVSQSWGSPKESVKAGSSQGW
GMPNAEGSEGGERPRQWGKPKSPDVSQGWGSPKESVKAASSKGWGLPNAGATHGSERKQW
GQQSGEFKKNRAEGSRGWGSNPDWKSKNRPAKSPGIVNDDSSVGGIYTVTRQRLDMFTSQ
EQDILSEIEPLMLAIRRIMHHSGYNDGDTLSAADQSYILDNVFNYHPDKAAKMGAGIDHL
TVNKHSSFQDTRCFYVVSTDGCEQDFSYRKCLENFVKGKYPDLAEEFNGKYFARPRSRGI
QLQNVVSERTGDDSKWQNSVSEGTGEGNQQQNVVSERTGDDSKWQNSVSEGTGDGSKWQN
LVLEGTGDGNQQQNIVSEGTGDDNGS
NT seq 6021 nt   +upstreamnt  +downstreamnt
atgcaagtgagtctccctcttcaactcacacaaactcttggaacggaacaaaacgctcag
tacactgcgcacatactcaatttgtatgttgctaataaagctatggaggagaatgtgcaa
tttaccattttagatggggaggtagttggtatcagatttgggttggccactcccaaggaa
atatctacagcatccgtcagtggatgctcgataaaccattcaagtcagctcacaaatccg
tatcttggtttgccccttgaatttggcaaatgtcagtcttgtggcacttctgaagctgga
aaatgtgaaggccactttggatatattgaactgccaataccgatctatcatccaagccac
ataagtgaattaaagaggttgctgagcttgctatgtttaaagtgcttgaaactgaaaaca
aacaagtttcaggccaagagcaatggtgtggctgaaagattgttttcatgttgtgaggag
gcttcacaaatttctgttaaagagattaaaacaacagatggagccctttttttgcaatta
aagctaccatctaggatgagactaaatgatggtttctggagtttcctggatagatatggt
tttcattatggtggtgatgacactattcggtccttacttccatgtgaggtgatggaaatg
ctaaagagaatcccacaggacactagaaaaaagcttgctagaaaaggttactttcctcaa
gagggttatattatgcgatatctacctgttcctccaaattgtctgtcggttccagacatt
tcagatggtgtcagcatcatgtcctcggatctttctatatcaatgctcaagaaagttctt
aagcaagtggagataatcaaaagttcaaggtctggctcaccaaattttgagtctcatgaa
gttgaagcaattgatttgcagtcagcagtggatcagtaccttcaagttaggggcactgca
aaaggatctcgcgatgttgaatcacgatttgggatacacaaggagtccaatgattcctca
accaaagcttggcttgagaaaatgagaactttgttcatcagaaagggctcaggattctct
tcacgtagtgtgattactggcgatgcatacaagcgggtgaatgaaattggtatcccattt
gaaattgcacaaagaatcacatttgaggagagagttagtgtgcacaatgtgaaatatctt
caagagcttgtggacaataaattgtgcatgacatatagagacggttcttccacatattcg
ctcagggatggttccaagggacatacatttcttcgacctggtcaggttgtgcatcggcga
attatggatggagatacagtgttcattaatcgacccccaacaacacacaagcattctttg
caagcactttcagtgtatgtgcatgatgatcatacggtgaaaatcaatcctctaatatgt
gggcctctgagtgctgattttgatggtgattgtgttcatctattctatccccagtccctt
gctgcaaaagctgaagtattggagctgttttcagtagagaaacaattgcttagctctcat
agtgggaatctgaatttgcaactgaccactgattctcttttgtcattgaagagcatgttt
aaggcatacttcttggacagagcagctgctcagcaattagctatgtttgtgtcattttct
ttgccacagccaactctgtggaaagttccctactctgacccaatctggactgttctgcag
atattgcagactgctttgccttctcagtttgactgcactggtgaaagatactttatcagt
aaaggtgacataataaagattgatttcagcagggatgttgtacaaagtgttattaatgaa
attgtgatctcaattttttttgagaaaggtcctgatgcagttttcaagttcttcaattct
ttacagcctttgttaatggagaatttgttttctgaaggatttagtgtttgtttggaggac
ttatacatatctagggctgtcattgaaagtatacataaagattttaaggttatttctcct
ttgttaagtcaattaagatcaacctataatgagctagtggagttgcaattggaaaatcac
atccggcaggtgaaacttcgtgttgcggaatttattgtgaggtcatcttccataggtgat
ttgattgattacaagagtgattcagccatgactaaggtggtccaacaaattggcttcttg
ggcttgcaaatttcagatagaggaaagttctattctaagactttggttgaggacatggtt
tctcattttgagagaaaatatccctctgaggtagttgagtatccatctgcacaatatgga
ttaattcagagctgtttttttcacgggttggatccctatgaggagatggttcattcaata
tctacgagagaggttattgttcgctcatcaagaggattatctgaacctgggacattattc
aagaacttaatggccatccttcgagatgttgttatctgttatgatggaactgtgaggaat
gtatgcagcaattcaataatccagtttgaatatggagtaaaggctgggattaaggcacag
agtttattccctgctggtgaaccagttggtgtgttagctgcaactgcaatgtccaatcct
gcatacaaggcagttcttgattccactcccagtagcaattcttcttgggagctgatgaag
gaaatacttctctgcagagttaattttaagaatgatctcactgatcgccgcatcattttg
tacttgaatgattgtggttgtgggagaaattactgtcaggaaaaagcagcctacaaggtg
aagaatcatttgcagaaagtcattcttaaggacattgcaaaccattttatgatcgaatac
aagagacagcacaccatagcggatgtgggccttgctggtcatattcatcttgataagatg
aagttggaaaatttgaaggttagcatggaagttattcatcagaagtgcacagagactgtc
aatttttttcgaaagaagaaaaaattagctctcttttttaaaaggatagaggtgtctgcc
agtcaatgttgctctttccaggaatcttgtgctgatgaatggtctggctcgccatgtttg
acattcttttggcaagatagtgatattcgtatagagagaatttcaaatctttttgctgat
atgatttgcccagttcttttggagacagtcatcaaaggtgatcatcgaatttcaaatgca
aacattacttggattagtccagatacaactacttggataagaaacccttccaggactcag
aagggagagctggcacttgatgttgttattgagaaatcggctgtgaaacaaagtggtgat
gcatggagaattgtcctagattcatgtcttcctgttctgcatttgattgataccacacgc
tctataccatatgctattaaacaaattcaagaattgttgggagtttcttgtgcatttgat
caagctgttcagcgcctctcaacctcagtgacaatagtggcaaaaggtgtgctgaaggag
catctcatactcctggcaaatagcatgacgtgtgctgggaatttggttggattcaattct
ggcggttacaaatcattatctcgctcattggatgtccaagtaccatttactgatgcaaca
ctctttacaccaagaaaatgttttgagcgagcggcagagaagtgtcatgtcgatacttta
tctagcatagttgcatcttgttcttggggtaaaaatgtggcggtaggtacgggatcacga
tttgatgtgctctgggataagaaggaggcctgtttggatcaagagggtagcatagatgtg
tatgaatttctaaatatggtgagatgcagtgcaaatggagaagaatcaactgcctgttta
ggtgcagatgttgatgatcttatgctagatgatggaatggatgactggaacctatcccca
gagcacaattttggttctgataagcccacctttgaagacagggctgaatttcagaattgc
ttagacaatcaacctgctgattgggaaaaggcttcatatgcagtgaatggatccagtagt
ggtggaaattggggtggtgataaaaatatggaaactgacaaggaaaattcttggtctggg
tggggaaggaatgcagctgaaacgcaaaatgccctctccacaaaagcccatgaggaatca
gacaagtccaatagttgggatactgcaggtggttggcaggcacaagccaatggcaaggca
gaaaataatgtagctgagacagactcttggtcaggttggggaacaaggaagacagaatca
tctgatgtccctgctaaaaaagtgcaagaagaatctgagcattctattggttgggatact
aaagctgcttggcaaacaaatatcagtggaggtactccgaaaagtgtacccgagccagac
tcttggtctggttgggaaacaaggaaaaatgaagtgcctgatgatcatggacggaaagct
caagaagaaactgggaggcctggtgatcatgatgctggtgctgcctggggaagaagggct
gaagttgatgacaatagttgggggaaacccaagtcacctcaggtttcactcagttggggc
acacctaaagagccagttaatgctggaagtttgcgtggttgggacctgccaaaagcaggt
gggagcaatggaagtgaaatacaaccacagtggggcaagtcaaagccacctgaaggttca
catggttggggctcgtccaatgagccagttaaagcagcaggttggaaccagccaaatgca
gggggcagtgatgcaactaaaagacagcagcagtgggagaaacccaagtcacctgaagct
tcacatggttggggcccatctaaggagccagttaaagcggctggttgggacctggaaaat
gcaggaggtggtgatggaagtgaaagacagcagcagtgggggaaatccaagtcatctgaa
gtttcacaaagctggggctctcccaaagaatcggtgaaagcaggaagttcccagggttgg
ggcatgcctaatgccgaaggtagtgaaggaggtgaaagaccacgacagtggggaaaaccc
aaatcacctgacgtttcacaaggctggggctcacccaaagagtcagttaaagcagcaagt
tccaaggggtggggtctgccaaatgcaggagccacccatggaagcgaaagaaaacagtgg
ggacagcagagtggagaatttaagaaaaaccgtgctgaaggatccagaggatggggttca
aatccagattggaaaagtaagaaccgtcctgctaaatcaccaggaattgtcaatgatgat
tctagtgtgggtggaatatatacagtaactagacaaaggttggacatgtttacttcgcaa
gagcaggatattctctctgaaattgagccattaatgcttgctatcagaagaataatgcat
cactctgggtacaatgatggggatacgttatctgctgctgaccagtcatatatacttgat
aatgtcttcaactatcatccagataaagcggcaaaaatgggtgctggcattgatcatctt
acagttaacaagcacagcagtttccaggataccaggtgcttttatgtagtttcaactgat
ggttgcgaacaggatttttcctaccgtaaatgccttgagaactttgtcaagggtaaatat
cctgacttggctgaggaattcaatggaaaatatttcgccagacctcgctccagaggcatc
cagctgcaaaatgtagtttcagagagaactggggatgatagcaagtggcaaaattctgtt
tcagagggaactggggagggcaatcaacagcaaaatgtagtttcagagagaactggggat
gacagcaagtggcaaaattctgtttcagagggaactggggatggcagcaagtggcaaaat
ttggttttggagggaactggggatggcaatcaacagcaaaatatagtttccgagggaacc
ggagatgataatgggtcttaa

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