Jatropha curcas (Barbados nut): 105633321
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Entry
105633321 CDS
T03922
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105633321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105633321
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105633321
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105633321
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105633321
U7-dependent histone pre-mRNA processing factors
105633321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
105633321
NCBI-ProteinID:
XP_012071284
UniProt:
A0A067KRH9
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MASTGQSQSLKRRDAPVTREGDQLTVTPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
GMAALPYFDEIDPSTIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKVIYKLLLT
DYVKVSKVSIEDMLFDEQDINRSMDKIEVIDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAEMPQFSPDICIIESTYGVQLHQPRHIREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEFWANHPELHNVPIYYASPLAKKCMTVYQTYILS
MNERIRNQFANSNPFKFKHISPLNSIEDFTDVGPSVVMASPGGLQSGLSRQLFDMWCSDK
KNACVIPGYVVEGTLAKTIINEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLRE
LMPPNIILVHGEANEMGRLKQKLITEFADGNTKIVTPKNCQSVEMVFNSEKMAKAIGKLA
EKTPEVGETVSGILVKKGFTYQMMAPEDLHVFSQLLTANITQRITIPFSGAFGVIKHRLE
QIYESVESGTDEESGVPTLQVHERVTVKQESDRHISLQWSADPISDMVSDSVVALVLNIS
REMPKVVVESEAVKSEEENVKKAEKVIYALLVSIFGDVKPGENGKLVISVDGNVAQLDKQ
SGDVESENAGLKERVKTVFRRIQSAVRPIPLSGS
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacaggacaatcacaatctttgaagagacgagatgcgccggtaacaagagaa
ggggatcaactaactgtaactcctctcggcgccggaaatgaagtgggtcggtcttgtgta
tacatgtcctataagggcaaaacaatcctgtttgattgtggaattcatccagcttattcg
ggcatggctgccttgccatacttcgatgagattgatccttccactattgatgtactcctt
atcacccactttcacttggatcatgctgcatctctaccttatttcttggagaagaccacg
tttaagggtcgtgtgttcatgactcatgcaaccaaggttatttataagttgctgttaact
gattatgtgaaagtgagcaaggtttcaattgaagacatgttgtttgatgaacaagatata
aatcgttccatggacaaaattgaggttattgatttccatcaaacagtggaggtcaatggc
attaaattttggtgttatactgctggccatgtccttggtgctgccatgttcatggttgat
attgctggtgttcgagtactgtatactggagattattcacgtgaagaagatcgacatctt
cgtgctgctgagatgccacagttttctcctgatatatgtataattgaatctacttatggg
gtccaactccatcaacctcgacatattcgagagaagcggttcactgatgtcatccactca
accatttctcaagggggtcgtgttctaatcccagcatttgcccttgggcgtgcccaagaa
cttctcttgatccttgacgagttctgggcaaaccatcctgagctccataacgttcctata
tattatgcttctccccttgcaaaaaagtgtatgactgtctatcagacatatatcctttca
atgaatgagaggattcgcaaccagtttgcaaactcgaatccattcaaattcaaacacata
tcgcccttaaacagcatagaggatttcactgatgtggggccatcagttgtcatggcaagt
cctggtggactgcaaagtgggctgtcaaggcagttatttgatatgtggtgctccgataag
aaaaatgcttgtgttatacctggatatgttgttgaaggaaccctagcgaagaccatcatt
aatgaaccaaaggaggtcactctaatgaatggtctaactgctccattgaacatgcaggtc
cattatatttcattctctgctcatgcggattatgctcagacaagtacattcttgagagag
ctcatgcctcctaacataattcttgttcatggagaagccaatgaaatggggaggctcaaa
cagaagcttatcacagagtttgcagatggcaacaccaaaatcgtcacccctaagaattgt
cagtctgttgagatggttttcaactctgaaaaaatggcaaaagcaattggaaaactggct
gaaaagaccccagaagtgggcgaaaccgtcagtggcatactagtaaagaagggcttcact
tatcaaatgatggcacctgaagatctccatgtattctcacagctattgacagcaaatatt
acgcagaggattaccattccattctccggtgcctttggtgtgataaagcatcgacttgag
caaatatatgagagtgtggaatctgggacagatgaggagtctggagttccaacgctgcaa
gtgcatgagcgagtgacagtgaagcaggagtctgatagacacatttcgcttcaatggagt
gcagatcctataagtgatatggtgtctgactcggttgtagctctagttttgaacatcagt
cgggagatgccaaaggttgtagttgagtcagaggctgtaaaatcagaggaagaaaatgtg
aagaaagcagagaaggttatctatgctctccttgtctcgatctttggagatgtgaagcct
ggagagaatgggaaactggttataagtgttgatgggaatgtggcacagctggacaaacag
agcggagacgttgagagtgaaaatgcaggtctcaaggaaagagtgaagactgtgtttagg
cgaattcaaagtgcggtgaggccaattccactctctggatcataa
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