Jatropha curcas (Barbados nut): 105634133
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Entry
105634133 CDS
T03922
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-dependent RNA polymerase 1
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
jcu
Jatropha curcas (Barbados nut)
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
jcu03036
]
105634133
Enzymes [BR:
jcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
105634133
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
105634133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
105634133
NCBI-ProteinID:
XP_037497209
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MGKTIQVYGFPSHVTVDEVKKFLESHSGEGTVFAMKIRETKNRGRRKYAIVQFQTARDAE
LIISLTNKRLRYGTSYCYALHISRLXALWTNPIIATNTAQNVLQQPNGPXTLHFGCQISQ
QKKIFLFISKEKFSVLWTGTNVSVNFGFGMRKLQFFLSHGQMGYKLDLSYENVWQMELHC
PRGRSVKYLLIQLYGAPRIFEKEIATFNVFEIPLFNDLKDTPDEQWVRTIDFTPFCLIGH
SSGLCLEFPSSINVPKFQENFSYYKESEGIFVLENGNAFSRNLDLVPIVGPPSGVDLPFE
ILFRVNLLVQNGCLPGSALDSSFYELVDPSTMNIDCIEHALKKLFHLKECCYEPSRWLDE
QYRKYLKSKCHPRSPSISLGSGLVYMRRVQITPCKVYFCGPEVNVSNRVIRHYSKDINNF
LRVSFVDEELEKIYSTDLCPRASSGNGDRRTAIYKRILSTLQNGIVIGNKRFEFLAFSSS
QLRENSCWMFASRDGLTAADIREWMGNFRQIRNVAKYAARLGQSFGSSTETLSVPLKYTL
SAKYLLSSLAQSGVEMWATKVSIHLHSNSFYGGYKAMQESMMLQMFRASKLLDLRTKSRI
FVPNGRSMMGCLDETRNLEYGQVFVQYSGSKHKQVYDSSTMVGGIGSGNGFVIEGMVIVA
KNPCLHPGDIRVLRAVNVPDLHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWDPDL
IPRQQLPPMDYTPQPSLQLDHDVTIQEVEEYFTNYMLNDSLGIISNAHTVFADREPAKAM
SKPCLKLARKFSIAVDFPKTGVPAEIPSHLRVKEYPDFMEKPDKPTYESQNVIGKLFRAV
RDIAPHTSSIKSFTLEVARQCYDPDMEVDGFEDYIDDAFYYKTNYDYKLGNHMDYYGIRT
EAEILGGSIMKMSKAFTKKRDAEAIGLAVRSLRKEARSWFNEKGSGLDSEEDDVYAKASA
WYYVTYHPSYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRKRRCQNLSLLERQFGLGLHFH
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagacgattcaggtgtatggattcccttcccatgtgactgtagatgaagtcaag
aagtttctggaatcacattcaggggaaggaactgtttttgcaatgaagatcagggaaacc
aaaaataggggtcgaagaaaatatgctattgttcaattccagactgccagagatgctgaa
ttaattatatctttgactaataaacgtcttcggtacggcacttcatattgttacgcactt
catatctcaaggctctgagccttatggactaatccgataattgctaccaatacagcccag
aacgttctacaacagccaaatggaccataaacactgcattttggatgtcagatatcacaa
caaaagaaaattttcctgttcatatcaaaagaaaagttttctgttctatggacagggaca
aatgtttcggtgaattttggatttggaatgagaaaattgcaattttttctatctcatgga
caaatgggctacaagcttgacctttcttatgagaatgtttggcagatggagctacattgt
ccacgaggtcgatctgtgaaatatcttctaattcagttatatggtgcaccccgaattttt
gagaaagagattgcaacatttaatgtgtttgagattccgcttttcaacgacttgaaggat
acccctgatgagcaatgggtcaggacaatcgatttcacaccattctgccttattgggcat
tcatctggattatgtttggagtttccttccagcattaatgttccaaaatttcaggagaac
ttttcttactataaagaaagtgaaggaatttttgttttggagaatggcaatgctttttct
cgcaatctggatctagttccgattgttggtcctccctcaggcgttgatttgccatttgag
atattatttcgagttaatttgttggttcagaatgggtgccttccagggtcagcacttgat
tctagtttttacgagttggttgatccaagtacaatgaatattgactgcatagagcatgct
cttaagaagctttttcacttgaaagaatgttgttatgaaccttctaggtggcttgatgag
cagtacagaaagtatcttaagtctaagtgccatccaagatcaccttcgatatccctaggc
tctggtttggtatacatgcgtagggtccaaattacaccatgcaaagtctatttttgtggt
ccagaggttaatgtctcaaaccgtgtgatacgccactattcaaaagatattaataatttt
ctccgtgtgtcttttgttgatgaggagttagagaaaatttattcaacagatttatgtccc
cgtgcttcttctgggaatggggataggaggactgctatttacaaaaggattctctctact
ctccaaaatggaatagttattggaaataaaaggtttgagttccttgccttttcatctagc
cagctgagggaaaattcttgctggatgtttgcttcaagagacgggctcactgctgcagat
ataagagaatggatgggaaactttcgtcagatacgaaacgtggctaaatatgcagccaga
ttaggtcagtcttttggttcatccactgaaacactgagtgttccactgaaatacactttg
agtgcaaaatatctgctgagttcgctcgcgcagagtggcgttgaaatgtgggcaaccaag
gtttctatccatctgcattcaaattcgttttatggtgggtataaagcaatgcaagagtca
atgatgctccaaatgttccgagcatcaaagttgcttgatctgcggacaaaatctagaatc
tttgttccaaatggaagatctatgatgggatgtttggatgagacaagaaacttggaatat
ggccaggtatttgtgcaatattctggtagtaaacataagcaggtgtatgatagttccacc
atggttggaggcattggatcaggcaacggttttgtgattgagggaatggtcattgtagct
aaaaacccatgtctgcacccaggtgatattcgtgttttaagggctgtgaatgtaccggat
ttgcaccatatggtggactgtgttgtttttccacagaaaggaccaagacctcatccaaat
gaatgctcgggtagtgatttagatggagatatctactttgtctgctgggatcctgattta
atcccacgtcagcaactcccaccaatggactatacaccacagccaagtttgcaactcgat
catgatgtcacaattcaggaagttgaggagtatttcaccaattacatgttaaatgacagc
ttgggaatcatttctaatgctcacaccgtctttgctgatagggaacctgcaaaagcaatg
agtaaaccatgtctgaaacttgcacgtaaattttcaattgcagttgattttccaaaaact
ggagtaccagctgaaattccttctcatctacgtgtcaaagaatatcctgatttcatggaa
aagcctgacaaacccacctatgaatctcagaatgtgattggaaagcttttccgagcagtg
agggacatcgcaccacatacaagctctattaagtcctttactttggaagtggcaaggcag
tgttatgaccctgatatggaagttgatggttttgaggattatatagatgatgccttctat
tacaaaacgaattatgattacaaattgggtaatcatatggactattatggcatcagaact
gaggctgaaattctcggtggaagtattatgaaaatgtcaaaagctttcaccaagaaaagg
gacgcagaagcaattggtttggcggtgaggtccttaagaaaagaagcaagatcctggttt
aatgaaaagggaagtggattagattctgaagaagatgatgtttatgcaaaagcctccgct
tggtactatgttacttatcatcctagttattggggttgctacaacgagggaatgaatcga
gatcattttcttagctttccttggtgtgtttatgacaagctgatccagatcaagaggaag
agaaggtgtcaaaatttatcattgcttgaacgccagtttgggcttggactgcattttcat
taa
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