Jatropha curcas (Barbados nut): 105634868
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Entry
105634868 CDS
T03922
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105634868
09122 Translation
03013 Nucleocytoplasmic transport
105634868
03015 mRNA surveillance pathway
105634868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105634868
03041 Spliceosome [BR:
jcu03041
]
105634868
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105634868
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105634868
Spliceosome [BR:
jcu03041
]
Complex C
Other components
EJC/TREX
105634868
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
105634868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
105634868
NCBI-ProteinID:
XP_012073200
UniProt:
A0A067KLR9
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGEVKDNDAYEEELLDYEEEDEKAPDSVSAKAGAESAKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECPHIVVGTPGRILA
LARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaagtaaaagacaacgacgcttacgaggaggagctgctcgactatgaggaagaa
gacgaaaaggcccctgactccgtctctgctaaggccggagctgaatctgctaaaaagggc
tatgttggaattcacagttcaggattcagagacttcctgttgaagccagagcttctgcga
gccattgtagattctggatttgaacatccttcagaagtgcaacatgagtgcatccctcaa
gctatccttggaatggatgtcatttgccaagcaaaatctgggatggggaagactgctgtt
tttgttctatctactctgcagcagattgaacctgttgcgggtcaagttgctgcgcttgtt
ctttgccatacaagagaattagcatatcagatatgccatgaatttgagagattcagtacc
tatttgcctgatataaaggttgccgtcttttatggtggtgtcaatatcaaggttcacaag
gatatactaaagaatgaatgccctcatattgttgttggaactcctggaagaatattggct
cttgcacgagataaagaccttgggttgaagaatgtgaggcattttatcctagatgaatgt
gacaagatgcttgaatcacttgacatgaggagagatgtgcaggagattttcaagatgact
cctcatgataagcaagttatgatgttttcggcgacacttagcaaggaaattcgccctgtt
tgcaagaaattcatgcaagatcctatggaaatttatgtagacgatgaggccaagttgact
cttcatggtcttgtacagcactacatcaaattgactgagatggagaaaaatcgcaagttg
aatgatctgcttgatgccttggacttcaatcaagtagtcatctttgtgaaaagtgtgaac
agagcagctgagctgaacaaattattggtagaatgtaacttcccctccatatgcatccac
tctggaatgtctcaggaagaaaggttgacaaggtataagggtttcaaggaggggcataag
cgaattcttgtggcaactgatttggttggtagaggaattgatattgaacgtgtaaacatt
gttgtcaactatgacatgccagattctgccgatacttacctgcatagggtagggagagcc
ggtaggtttggcaccaagggacttgcaattacatttgtctcatctgcatctgactctgat
gtgctgaatcaggttcaagcaaggtttgaggtggatataaaggagcttcctgagcagatt
gatacttctacatacatgccatcgtga
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