Jatropha curcas (Barbados nut): 105635129
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Entry
105635129 CDS
T03922
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105635129
03015 mRNA surveillance pathway
105635129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105635129
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105635129
mRNA cycle factors
P-body specific factors
105635129
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
105635129
NCBI-ProteinID:
XP_037497184
LinkDB
All DBs
Position
Unknown
AA seq
503 aa
AA seq
DB search
MIMKKKEPSERTRVVIRHLPPSLSQFHLFSQFDHLFSQRYNWFCFRPAKFSQKHQRYSRA
YIDFKNPGDVLEFADIFHGHIFYNERGSQFKAIVEYAPSQRVPKTCTLKDDRDGTIYKDP
DYLEFLKLIAKPVENLHSAEPQLERKEAEQSASAKESPVTTPLMEYVRQKRAAKDENQDA
SAGLKDNRKARSASVNKPGSSATRKGAQKKKHNLKGSAKNSNHKSKSTILAAPNQGDQPA
NQYGKEISGIQSVSSVGGHVSISTLTGDSGKKRIPLLKGKEYEISAVSGGMLHKPGNPAV
AISHKQNQRFKTNERLVKGILLNKEAHKNQPLAGIQPWLKFQNSSLKNDKRSPWPIDKLA
GSNGHLPNIEPIASTSNDDVKQTSDGKFLTRGRHSLASSTEKQEKSTRNNNRPDNGVWTP
LGHSDVQCDNDQFTNTMLQQKHSDSVEGSHKRFGHHVAVHKLKDNSSLIASEWKYTRRGG
ASSYAVHEKQVWVQKSTSGSWTN
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgataatgaaaaagaaagagccttctgaaaggaccagagtggttataaggcatttgcct
ccttctctctcccaatttcatctcttctcccaattcgatcatcttttctctcaacgctac
aattggttctgctttcgccctgcaaagttcagtcagaagcatcaaagatattctcgagcc
tacatagacttcaagaacccaggagatgttttggagttcgcagatatcttccatggtcat
atattttacaatgagaggggttctcagttcaaggccatagttgaatatgctccttctcag
cgtgttcctaaaacttgtacattaaaggatgatcgtgatgggaccatttataaagatcct
gattatctggaattcctcaaacttattgcaaaaccagttgagaatcttcatagtgctgaa
cctcagttggaaagaaaagaagcagaacaatccgcttctgcgaaagaatctcctgttacg
acacccctgatggaatatgttcgtcagaaacgagctgctaaggatgaaaatcaggatgca
tcagctggtctcaaggataacagaaaagctaggtcagcatctgtgaacaagcctggatca
agtgctactagaaaaggtgctcaaaagaaaaagcataatctgaagggcagtgcaaagaat
tcaaaccacaagagcaaatcaactatccttgcggcacctaatcaaggagatcaacctgct
aatcaatatggaaaagaaatatcaggaattcaatctgtctccagtgttggtggtcatgtt
tcaatatctactttgactggagattctggaaagaaaagaatcccgcttctcaaagggaaa
gaatatgaaatttctgctgtgtctggaggtatgttgcacaagcctggaaatccggctgtt
gccatttctcataaacaaaaccagaggtttaaaactaatgaaagactggtaaagggcatc
ctcttaaacaaggaagcgcataaaaatcaacctttggctggcatacagccctggctcaaa
tttcaaaattcaagtttgaagaatgacaagcgatcaccttggcctatcgacaaactagcg
ggttctaatggtcatcttcctaatattgaaccaattgcgtctacttctaatgatgatgta
aaacagacttcagatggcaagttcttgacaagaggcaggcatagtttagcctcttctact
gaaaaacaagagaaaagtacaagaaataacaacagaccagataatggagtgtggactcct
cttggtcattctgacgttcaatgtgataatgaccaatttacaaatactatgttgcaacaa
aagcattcggattctgttgaaggatcccacaaacgttttggacatcatgtggcagtccat
aaactgaaggataacagctccttgattgcatctgagtggaaatacacaagaagaggagga
gctagtagctatgctgttcatgagaaacaagtgtgggttcagaaatcaacttctggttcg
tggactaactaa
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