Jatropha curcas (Barbados nut): 105635143
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Entry
105635143 CDS
T03922
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105635143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105635143
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
105635143
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_11
TPR_1
TPR_2
TPR_14
TPR_16
TPR_9
TPR_12
TPR_8
TPR_7
Motif
Other DBs
NCBI-GeneID:
105635143
NCBI-ProteinID:
XP_012073532
LinkDB
All DBs
Position
Unknown
AA seq
1186 aa
AA seq
DB search
MAGLFQEQEKDEDYRAQLTYLEESVEAHPEDPSLRFDLGLLLWEKGGESKEIKEKAAQHF
VISAKLNPDNADAFRYLGHFYFGADSQRAIKCYQRAITLNPDDSESGESLCDLLDNSGRE
SLELAVCVEALEKSPRAFWAFRRLGYLHLHHTRWSEAVQSLQHAIRGYPTCADLWEALGL
AYQRLGMFTAATKSYGRAIELENTRVFALIESGNIFLMLGSFRKGVEQFQRALEISTQNV
SANYGLASGLLGLSKECMNLGAFKWGASLLQDAGRVAEVNAELAGNVSCIWKLHGDVQHT
YAKCCPWMEGDCDTEFGADAFDDSISSWKQTCRLAAMSARRSYQRALHLSPWQANLYIDI
AITLDLISSMNENYGHEIYPWQLSEKMVFGALFLEGDNYEFWVTLGCLSGHSAMKQHALI
RGLQLDVSSAVAWAYLGKLYREEGEKILARQAFDCARSLDPSLALPWAGMAADAHAREPA
ADDAFESCLRAVQILPLAEFQIGLAKLALLSGHLSSSQVFGAIQQAVLRAPHYAESHNLK
GLVCEARCEYQAAVASYRLATYAINISPDNASKSHFRDIAVNLARSLCRAGYVADAVHEC
ENLKKEGMLGAEGMQIYALSLWQLGKSDLAVSVARNLAASVPKMERASAAAAISFLCRLF
YCICGLDSAITSILELPKELFQSSKVSFILSAIHALDQSNRLESVVSSSRYSLESHEDVT
GMHHLIALDKLVKHGSESCLGFQSGVSYLKKALHKYPNSKLMRNLLGHLLLSTEEWKDTH
LATRCCVIDVPYGTSKVAFRSGHEILGAGAVACYAIGNKDPKFFYPTCGYQCLHGSEAIQ
ELLKYLRQEPWNHNARYLLILNILQKAREERFPQQLRHMLKQLISVQLSNELYSRGSLSY
QYQKFQLLLCMSEICLQGGNLFDCIEHAKNAVSLSLPHHYLFFGHLLLCRAYAAEGNLVK
LQEEYIRCLELRTDYHMGWICLKIMESQYDIQIDSNIFDLSFKKCPKEWKTSWNMWMAVF
NLVFGLVSLWNKEFSSAEESLAEACSLAGADSCLFLCHGAVCMELARQLCNSQYLALAIR
SLNKAHANSIVPLPIVSLLLAQAEGSLGSKQKWEKNLRQEWYSWPPEMRPAELFFQMHLL
ARQSEAGFDSSSNVEFCQSPLKWVLRAIHTNPSCVRYWKVLPKLME
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcgggtttgtttcaggaacaagaaaaagatgaagactacagagctcagttgacgtac
ttggaggagtcagtggaagcccatcctgaagacccctctcttcgttttgatctcggactg
ttgttgtgggagaaaggaggtgaatccaaggaaatcaaggagaaagccgcccaacatttc
gttatatcggccaaattgaatcccgacaatgcagatgctttcagatatttggggcatttc
tactttggtgccgattctcaaagggctatcaagtgttatcagagggccatcactctcaac
cctgatgattcggaatctggggaatccctatgtgatctgttggacaattctggaagggag
agcttggagctggcagtgtgcgtggaagccttggagaagtctccaagggccttttgggct
tttcggagattgggttacctccatcttcatcacaccagatggtctgaagccgttcagagt
cttcaacacgccattagaggttatcccacctgcgctgatttatgggaagctctgggtctt
gcctaccagcgacttggcatgtttactgctgctactaagtcctatgggcgagccattgag
ttggagaatacgagagtttttgctttgattgaaagtggaaatatcttcttgatgctcggt
tccttcagaaagggagttgaacagtttcagcgagctctggagatttcaactcaaaatgta
tctgcaaactatggtctagcttctggactcctaggtttgtcaaaggaatgtatgaatttg
ggcgcattcaagtggggagcgtcattattacaagatgcagggagagtcgcagaggtaaat
gccgagttggctggaaatgtttcatgtatctggaagttgcatggtgacgttcaacacact
tatgcaaaatgttgtccctggatggaaggggactgcgatacggaatttggtgcagatgct
tttgatgattcaatctcttcctggaagcaaacttgtcgtttggctgcaatgtctgccaga
aggtcttatcaacgggctctgcacttgtccccatggcaagctaatctctatatcgacatt
gcaataactttggatctcatttcttctatgaatgagaattatgggcatgaaatatatcct
tggcagctttcagagaagatggtctttggggccttgtttcttgagggtgacaattatgag
ttctgggtgacactaggatgtttatctggtcatagtgcaatgaaacagcatgccttgatt
aggggtttgcaattggatgtatcgtcagctgttgcttgggcttatcttgggaagctttat
agagaagaaggtgagaagatattggcaagacaggcatttgattgtgccagaagtttagat
ccctcacttgcattaccatgggcaggaatggctgctgatgctcatgctagggagcctgct
gcagatgatgcttttgagagctgtttacgagctgtgcagatattacctcttgcagagttc
caaattggtcttgctaagcttgctttgctctcaggtcatctttcatcttcacaggtattt
ggagccatccagcaggcagttctgcgtgctcctcactatgcagaatctcataatttgaaa
gggctagtttgtgaggcgcgatgcgagtatcaagctgctgttgcttcgtataggctagca
acctatgcaatcaacatttcaccagacaatgcttcaaaatctcatttccgagatatagca
gttaacttggcacgatctctttgtagggcgggttatgttgcagatgcagttcatgaatgt
gaaaatttgaagaaagaaggtatgcttggtgctgaaggcatgcagatatatgctttatcc
ttatggcaacttggtaagagtgaccttgctgtttctgtggcaagaaatctggctgctagt
gtacctaaaatggagcgagcatctgcagcagctgctattagtttcttatgcagattgttt
tattgcatttgcggactagattcagcaattactagcattttggaattgccaaaagaactg
tttcagagttcaaaagtcagctttatactgtccgctatacatgctcttgatcagagtaat
cgacttgagtcagttgtttcaagcagtcggtactcacttgaatctcatgaagatgtcact
ggaatgcaccatctaatagcacttgacaaattggttaaacatggatctgaatcttgcctt
gggtttcaaagtggagttagttatctgaaaaaagctcttcataagtatcctaacagcaaa
ttgatgaggaatttgctgggtcaccttttgctatccactgaagaatggaaagacactcat
ctagcaactaggtgctgcgtcatagatgttccatacggtaccagtaaagtagcttttagg
tcaggacatgagatccttggtgctggagcagttgcttgctatgcaattggaaataaagac
ccaaaatttttttacccaacatgtggttatcagtgtctgcatggatctgaagccattcaa
gaactgctgaaatacttgcgtcaagaaccatggaaccataatgcacgatatttgcttata
cttaatattttacagaaggcacgtgaagagagattccctcagcaacttcgtcatatgcta
aagcaactaatatcagtgcaactctccaatgagctatattctagaggaagcttgtcatat
caatatcaaaagtttcagcttcttctctgtatgtctgaaatttgtttgcaaggtggaaat
ctatttgattgtattgagcatgctaaaaatgccgtgtcactttccctccctcatcactac
ctattttttggacacttgctcttatgtcgagcgtatgctgctgaaggcaaccttgttaag
cttcaggaagagtatataagatgcctggaacttaggacagattatcatatgggatggata
tgtcttaaaatcatggaatcccaatatgacattcaaattgattcaaatatcttcgacctt
agtttcaagaaatgcccaaaagaatggaagacttcatggaatatgtggatggctgtgttt
aatttggtttttggtctagtatctttatggaataaggagttttcatctgctgaagaatcc
cttgctgaagcttgttctctggcgggtgctgacagctgtctttttctctgtcacggtgct
gtatgtatggagcttgccagacagttatgtaattcgcaatacttagcacttgctattagg
agtctcaacaaagcccatgcaaattctattgttcccttgcctattgtatccttgttgcta
gcacaagcagaagggagccttggttctaagcagaaatgggagaagaacctccggcaagaa
tggtattcttggccaccagaaatgagacctgcagaactcttctttcaaatgcatttgctt
gcaagacaatcagaagctggatttgactcttcatccaacgtggaattctgtcaaagccca
ctgaaatgggttcttcgggctattcatactaatccttcttgtgtgagatattggaaggtt
ttaccaaagcttatggaatga
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