Jatropha curcas (Barbados nut): 105635232
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Entry
105635232 CDS
T03922
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105635232
03015 mRNA surveillance pathway
105635232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105635232
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105635232
mRNA cycle factors
P-body specific factors
105635232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
DUF1033
Motif
Other DBs
NCBI-GeneID:
105635232
NCBI-ProteinID:
XP_037495278
LinkDB
All DBs
Position
Unknown
AA seq
612 aa
AA seq
DB search
MDSHEDECRVGGEQQAKQDDGEAVARLEEIKKSIEVKAALRQSNLNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMDELRNVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLVQGLLKVFFPGKAGEDLDVDRNSKAMKKRSTLKLLLELYFVGVIED
SSIFINIIKDLTSVEHLKDRDATQTNLTLLASFARQGRVFLGLSLSGQEIHEEFFKGLNI
TADQKKIFRKAFTTYFDCVSELLQSEHASLRQMEHENAKILNAKGELSEENVSSYEKLRK
SYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTTGEDVSSPAAGKDSSILEALWDDEDTR
AFYECLPDLRAFVPAVLLGEAEPKANEQSAKAQEQPNEVAPESDQGQSTQDTAELSVDSG
TLQEGKSIEKVKDKEEKDKEKAKDPEKEKGKEKDAEKKGDSDKEKLKGLEGTNLDALLQR
LPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKD
ISSMLVQMLEEEFNFLINKKDQMNIETKIRNIRFLGELCKFRIAPPGLIFSCLKVCARSL
LIFIFLFILVFL
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatagccacgaggatgagtgccgtgttggaggtgaacaacaggccaagcaagatgat
ggggaagctgttgctcgacttgaggaaattaagaaatcaattgaagtgaaagctgctctt
cgtcagagcaatctgaatcctgaaaggcctgattcaggattcctcaggactttggactca
agcattaaacggaatacagcagttattaaaaaattaaagcaaataaatgaagagcagagg
gaagggctaatggatgaattgcgaaacgtcaaccttagtaaatttgtcagtgaagctgtg
acagctatttgtgatgcaaagcttcgatcttctgacatacaggctgcagtgcagatatgc
tctttgctccatcaaaggtacaaggacttctcaccaagccttgtacaagggctcttgaag
gtcttttttcctggaaaggcaggtgaagacttggatgtggataggaactcaaaagctatg
aagaagcggagcaccttgaaactgttgttagaactttactttgttggagttatagaagac
agcagtattttcatcaatattatcaaggatcttactagtgtggaacacttgaaggaccgg
gatgctactcaaacaaatcttactcttcttgccagttttgctcgtcaagggagagttttc
ctaggactttctctctctggacaagaaattcatgaggagtttttcaagggccttaacatc
acagcagatcaaaagaaaatattcagaaaggcctttactacatattttgattgtgtatct
gaactacttcagtctgagcatgcttctcttcgccaaatggagcatgaaaatgcaaagatt
ttgaacgctaaaggagaactcagtgaggaaaatgtttcatcttatgagaaacttcggaaa
tcctatgaccacttgtatcgcaatgtgtcatctttggctgaagcacttgacatgcaacct
ccagtgatgccagaagatggccacacaaccagggttactactggtgaggatgtttcctca
cctgctgctgggaaagattcttctattcttgaagctttatgggatgatgaagatactaga
gcattttatgaatgcttaccagatctcagagcatttgttccagcagtattgttgggagaa
gcagagcccaaagcgaatgaacaatctgcaaaggctcaagagcaaccaaatgaggtagca
cctgaatccgatcaaggccaatctactcaagatactgcagagctatctgtagattctggt
actctgcaggagggaaaaagcattgagaaagtgaaggataaggaagaaaaggacaaggaa
aaagctaaagatccagaaaaagagaaaggtaaagaaaaggatgcagagaaaaaaggagac
agtgacaaggagaaactcaaaggtcttgaagggacaaacttggatgctttactgcagagg
ctccctggttgtgttagtcgtgatctcattgatcaattaactgttgagttttgttattta
aattcaaagtccaaccggaaaaagcttgtgagggcattgtttaatgtacccaggacatct
ctagaactgctaccatactactcacgaatggttgccacattatcaacttgcatgaaggat
atctcttccatgcttgtacagatgttagaggaggagttcaatttcttgataaataagaag
gatcaaatgaacattgaaacaaagatcaggaatatcagatttttgggagaactttgcaaa
tttagaattgcaccgcctggccttattttcagttgtttgaaggtatgtgccaggagctta
ttgatttttatatttttatttattttagtttttttatga
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