Jatropha curcas (Barbados nut): 105635804
Help
Entry
105635804 CDS
T03922
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105635804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105635804
03012 Translation factors [BR:
jcu03012
]
105635804
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105635804
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105635804
Translation factors [BR:
jcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105635804
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
Cas3-like_C_2
DUF6619
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
105635804
NCBI-ProteinID:
XP_012074305
UniProt:
A0A067KW79
LinkDB
All DBs
Position
Unknown
AA seq
1050 aa
AA seq
DB search
MSLCLLSTKSSFTSTFTFTFFCKRFLLLAAPISASAFSPFHLQISTLAMSRRPNFQGGRR
GGGGGGGGGSSSPGRGGGGRGGGRGGRGEQRWWDPVWRAERLRQKAAEMEVLDENEWWDK
MEKLKNGRDQEMIVKRNYSRSDQQTLSDMAYEMGLYFHAYNKGQTLVLSKFPLPNYRADL
DERHGSTQKEIQMSAETERRVGNLLNSSQSQRAAPANDFGAAASSQGDKQPSAGVKIMKP
VPDLETDSTKEKLSIELKQRQDKIMASNNMKEMQSFREKLPAFKVKGEFLKAVAGNQVLV
ISGETGCGKTTQLPQYVLEEEITHLRGADCNIICTQPRRISAISIAARISSERGENLGQT
VGYHIRLEEKRSAETRLLFCTTGVLLRQLIQDPELTGVTHLLVDEIHERGMNEDFLLIIL
RDLLPRRPDLRLILMSATINAGLFSKYFGNAPTIHILGFTFPVTELFLEDILEKSRYKIQ
SESGNFQGNSRRRRRREQDSKKDPLTELFEDVDIDSEYKNYSTSTRTSLEAWSGSELDLG
LVEAAIEYICRHEGDGAILVFLTGWDEISKLLDKIKGNKLLGDQSKFLVLPLHGSMPTVN
QREIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWIS
KASAHQRRGRAGRVRPGVCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVG
SFLAKALQPPDPLSVQNAIELLKTIGALDDNEELTPLGHHLCTLPLDPNIGKMLLMGCVF
QCLNPALTIAAALAHRNPFVLPIDRKTEADAAKRSFAGDSCSDHIALVKAFEGYKEAKRT
RNERAFCWEKFLSPITLQMMEDMREQFLNLLSDIGFVDKSRGASAYNQYSHDLEMVSAIL
CAGLYPNVVQCKRRGKRTALYTKEVGKVDIHPASVNAGVHLFPLPYMVYSKKVKTTGIYI
RDSTNISDYALLLFGGNLIPSKDGEGIEMLGGYLHFSASRSVLELIQQLRAELDKLLKRK
IEDPSLDISVEGKGVVSAVVELLHNYNLRR
NT seq
3153 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgtgcttactaagcactaaatcttccttcacttcaactttcactttcactttc
ttttgcaaacgtttcctactgctagccgcgcccatttctgcatcagctttctcacctttt
cacctgcagatctcaacactcgccatgtctcgccgccccaacttccagggaggccgccga
ggtggaggtggaggtggaggtggcggtagcagctcccctggtcgcggcggcggaggacgt
ggaggaggaagaggaggacgtggtgagcagcgttggtgggaccctgtgtggcgggcggag
cgcttgagacagaaagctgctgagatggaagttctcgatgagaatgaatggtgggataag
atggagaaactgaagaatggaagggatcaagagatgatagttaagagaaattatagccgt
tctgaccagcaaactctctctgacatggcttatgaaatgggtctttacttccatgcatat
aataaaggacagacacttgtgcttagcaaatttccattgccaaattatcgagctgatctt
gatgagcgtcatggatcaacacagaaagaaatccaaatgtctgctgagactgagagaaga
gttggaaatcttttgaacagctcacagagtcagagggcagcacctgcaaatgattttggt
gcagcagcatctagtcagggggacaaacaaccatcagctggcgtaaagataatgaaacct
gtccctgacttggagacagattctactaaggagaaactcagcattgaattgaagcagagg
caggacaaaataatggcaagtaataatatgaaggaaatgcagtcttttagagaaaagcta
cctgcattcaaagtgaaaggcgagtttctgaaagctgttgcgggaaatcaggttttagta
atttcaggggagacaggatgtggtaaaacaacacaacttccccagtatgtattggaagag
gagattacacatctgcgtggtgctgattgcaacataatatgcactcaaccacgtcgcata
tcagccatatccattgcagctcgaatttcatctgaaagaggagagaatcttggtcaaact
gttggttatcatattcgcttggaggaaaagcgatctgctgaaacccgtctactattttgc
acaactggtgttttacttcggcagttgattcaggatcctgaattgactggtgtgacccat
ttgttagtggatgaaatccatgaaagaggcatgaatgaggactttctattgattattttg
cgagatcttcttcctcggcgtccagatttgcgtcttattctaatgagtgctaccattaat
gctggcttgttctcgaagtactttggaaatgctccaactattcatatactgggatttact
ttcccagtgacagagttatttctggaagacatattggagaaatctcgttataaaatccaa
tcagagtctggcaactttcaggggaattcaaggaggagaaggagaagggagcaagattcc
aagaaagatcctttaactgaattgtttgaggatgttgatattgactctgaatacaagaat
tacagcacatctactcgaacttctcttgaagcttggtcgggttcagagcttgacttgggt
ctggtggaagcggcaattgaatacatttgtcgccatgaaggagatggtgcaattcttgta
tttcttactggctgggatgagatttccaagctgcttgacaagattaaaggaaataaactt
ctgggagaccaaagcaagtttctagtccttcccctgcatggttcaatgcctacagttaat
caacgtgaaatttttgatcgtcctccccctaacaagcgaaaaattgtacttgcaacaaat
attgcagagagtagtatcacaatagatgacgttgtgtatgttatagattgtggaaaggca
aaggaaaccagttatgatgctctaaacaagctggcttgtctgttaccatcatggatttca
aaggcttcagcacatcagagacgtggtcgtgctggccgtgtgcgacctggagtttgctat
agactgtatccaaaaattatccatgacgcaatgcttcagtatcagttacctgaaattctc
cgaacacctctgcaagagctatgtctgcacatcaaaagtctgcagcttggagctgttgga
tcttttttggcaaaggcacttcaacccccagatcctctttctgttcaaaatgctattgaa
cttcttaaaaccattggtgctttagatgataacgaggagcttactccacttggtcaccac
ctctgtactctacccctagacccaaatatcggaaagatgcttctgatggggtgtgtcttt
caatgcctcaatcctgctttaacaattgcagctgctcttgcacatcgtaacccatttgtt
ctcccaatagataggaaaactgaagctgatgctgcaaaaagatcctttgctggtgattct
tgcagtgaccacattgcacttgttaaagcttttgaaggatataaggaagcaaaacgtact
cggaatgaaagagcattttgttgggagaaatttttatccccgataacattgcagatgatg
gaggacatgcgagagcagtttttgaacttactatcggacattggttttgtggacaaatcc
aggggtgctagtgcttacaatcagtatagccatgacttagagatggtatcagcaatcctt
tgtgctggactttacccaaatgttgtgcagtgcaaaagaagaggaaaacggacagcatta
tacactaaagaagttgggaaagttgacatccatcctgcatctgtaaatgcaggggttcat
ctcttccctctgccatacatggtttacagtaaaaaggtgaaaacaactggcatttatatc
cgggactcaacaaacatatccgattatgctctgcttttgtttggtggtaatctcattcct
agtaaagatggtgaaggtattgagatgcttggaggttacctccatttttctgcatcgaga
agtgtattggagttgatacagcaattacgggcagaactcgacaagcttctgaagaggaag
attgaggacccaagcttggacatttcagttgagggaaagggagttgtctctgctgtggtt
gagttgttgcacaattacaatctacgccgctga
DBGET
integrated database retrieval system
