Jatropha curcas (Barbados nut): 105636318
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Entry
105636318 CDS
T03922
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105636318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105636318
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105636318
Spliceosome [BR:
jcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
105636318
Complex C
U5 SnRNP specific factors
105636318
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DDX23
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
105636318
NCBI-ProteinID:
XP_012074968
UniProt:
A0A067KHE8
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MKRSIDDIGANSNNKNGSKPVFLTKAQREQLALERRQEEIQQQKLRQQQLLAQIRSSDPN
NTNQKPSDSERRDRDKDRERDRDRDRDRSSRRDRDREREREEEAKARERARLEKLAERER
EKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGR
GFRAGMDRREQKKLAAKNEKEMREEIRKKEGVEEKPEEAAARKLKEEAADMYDTFDMRVD
RHWSEKKLDEMTERDWRIFREDFNISYKGSKIPRPMRSWNESKLSSELLKAVERVGYKKP
SPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLTYISRLPPMSEENEAEGPYAVVMA
PTRELAQQIEDETLKFAHYLGIKVVSIVGGQSIEEQGFRIRQGCEVVIATPGRLLDCLER
RYAVLNQCNYVVLDEADRMIDMGFEPQVVGVLDAMPSSNLKPENEDEELDEKKIYRTTYM
FSATMPPAVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFKLQRLLDELGD
KTAIVFVNTKKNADTVAKNLDKAGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVA
GRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKSGVATTFLTLHDTEVFYDLKQMLI
QSNSHVPPELAKHEASKFKPGSIPDRPPRRNDTVFAH
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgctcaatcgatgacattggcgctaacagcaacaacaagaatggatcgaaaccc
gtcttcttaaccaaagcccaacgcgagcaattggctctcgagcgccgccaagaagaaatc
caacagcagaaactccgtcagcaacagcttctcgctcaaatccgatcctctgaccctaac
aataccaaccagaagccttctgattctgaacgccgtgaccgcgacaaggaccgtgaacgg
gaccgagacagagatagagaccgctcctcgcgccgtgaccgtgaccgtgaacgcgaacgt
gaagaggaggctaaggctcgagagcgtgctcgattggagaaattagccgagagggagcgt
gaaaaagagctggattcgattaaagagcagtatttggggtctaagaaacctaaaaagagg
gttattaaacctagcgagaagtttcgattctcttttgattgggagaataccgaagatacc
tccagagatatgaattctttataccaaaaccctcatgaagctcagcttttgtttggccga
ggatttcgtgctggaatggatcgaagggagcagaagaaacttgcggccaagaatgagaag
gagatgagagaagaaattcgaaaaaaggaaggcgttgaagagaaacctgaggaggctgct
gctaggaaacttaaagaagaagctgcggatatgtacgatacttttgatatgagagttgat
agacattggtctgagaagaagctcgatgaaatgactgagagagattggaggatttttagg
gaggattttaatatttcttataagggatcaaaaataccacggcctatgaggagttggaat
gagagtaaactgagttcagagttgttgaaggctgttgaaagggttggttacaagaaacca
tctcccattcagatggcagctattccgctaggactgcagcagcgtgatgtaattggaatc
gcagagactggttctggtaagactgctgcctttgttttgcctatgttaacttatatttct
agattgcctcctatgagtgaggaaaatgaggctgagggaccttatgctgttgtcatggcg
cctactcgtgaattggcacagcagattgaggatgagactctgaagtttgctcattactta
ggaattaaagtggtttctattgttggtggacagtccattgaggagcaaggttttaggatt
aggcaagggtgtgaggttgttattgctactccaggtcgtttgcttgattgcttggaaaga
cgttatgctgtcttaaatcagtgcaattatgttgttcttgatgaggctgatcgcatgata
gatatgggttttgaaccccaagttgtgggtgtattggatgcaatgccttcaagcaattta
aaaccagaaaatgaagatgaagagcttgatgagaaaaagatttaccgcacaacttatatg
ttcagtgctacaatgccacctgctgtagagcggcttgcgaggaagtatttaagaaaccct
gtagtggtcaccattggtactgctggaaagacgacagacttaatatctcagcatgtgatt
atgatgaaggagtcagagaaatttttcaagttgcagagattgcttgatgaacttggagat
aagactgcaattgtgtttgttaacactaaaaagaatgctgacactgttgccaagaatcta
gataaggcaggataccgtgtgacaactttgcatggtggaaagtcccaagaacagagggaa
attagccttgagggttttaggaccaagagatacaatgtccttgttgctactgatgttgct
ggtcgtgggatagatataccggatgtggcccatgtcattaattatgatatgcctgggaat
attgagatgtacacccatcgcattggacgaacgggccgtgctggaaagtcgggtgtggct
acaactttcttgactctccatgacactgaggtattttatgatctgaagcagatgcttatt
cagagcaacagtcatgtgcctcctgagttggctaaacacgaggcttcaaaattcaagcca
ggatcaattcctgacagacctcctaggcgcaatgatactgtttttgctcactga
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