KEGG   Jatropha curcas (Barbados nut): 105636400
Entry
105636400         CDS       T03922                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03018  RNA degradation
jcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105636400
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105636400
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105636400
   03041 Spliceosome [BR:jcu03041]
    105636400
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105636400
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105636400
Spliceosome [BR:jcu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105636400
SSDB
Motif
Pfam: LSM DUF150_C RVT_2
Other DBs
NCBI-GeneID: 105636400
NCBI-ProteinID: XP_012075049
UniProt: A0A067KT67
LinkDB
Position
Unknown
AA seq 99 aa
MSSTGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISIVGELDEELDSHLDLSNLRAHPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcatctacaggccctggacttgagtctcttgtagatcaaacaatttcagttatcacc
aatgatggccgcaatatagtgggaatcttgaaaggctttgatcaggccacaaatattatc
ctcgatgaatctcatgaacgtgtttactccactaaggaaggtgttcaacaacttgttctg
ggtttgtacataatacggggtgacaacataagcattgtaggagaactggatgaggagctg
gattcacatcttgacttgtcaaatctaagagctcatcctctgaagcctgtcatccattga

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