Jatropha curcas (Barbados nut): 105636400
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Entry
105636400 CDS
T03922
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105636400
09123 Folding, sorting and degradation
03018 RNA degradation
105636400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105636400
03041 Spliceosome [BR:
jcu03041
]
105636400
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105636400
mRNA degradation factors
5'-3' decay
Lsm complex
105636400
Spliceosome [BR:
jcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
105636400
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
RVT_2
Motif
Other DBs
NCBI-GeneID:
105636400
NCBI-ProteinID:
XP_012075049
UniProt:
A0A067KT67
LinkDB
All DBs
Position
Unknown
AA seq
99 aa
AA seq
DB search
MSSTGPGLESLVDQTISVITNDGRNIVGILKGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISIVGELDEELDSHLDLSNLRAHPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctacaggccctggacttgagtctcttgtagatcaaacaatttcagttatcacc
aatgatggccgcaatatagtgggaatcttgaaaggctttgatcaggccacaaatattatc
ctcgatgaatctcatgaacgtgtttactccactaaggaaggtgttcaacaacttgttctg
ggtttgtacataatacggggtgacaacataagcattgtaggagaactggatgaggagctg
gattcacatcttgacttgtcaaatctaagagctcatcctctgaagcctgtcatccattga
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