Jatropha curcas (Barbados nut): 105636460
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Entry
105636460 CDS
T03922
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105636460
03015 mRNA surveillance pathway
105636460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105636460
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105636460
5.6.2.5 RNA 5'-3' helicase
105636460
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105636460
mRNA cycle factors
Common to processing body (P body) and stress granule
105636460
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
ATPase
AAA_16
PhoH
SRP54
AAA_22
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
105636460
NCBI-ProteinID:
XP_012075131
UniProt:
A0A067LBV1
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MDSEQSNLYETASQPDTGTDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLAATSSSS
AVDPATSDHRAAASSSDHHSDSPAASPVSSKAARGGGGNNTQAVDGIVASMGGLNFEETG
DEDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAK
HKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNW
DLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPG
VDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAY
FVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDI
NHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVESQNVRNTLPRRFGA
PGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV
AVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDE
QGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATE
PECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYR
MHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTS
YLNRTEAANVEKIVTTFLRSGVVPNQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEV
ASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQP
LWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIVSNDNFGSVA
SSSPNADRRSSRGRGSYMPPGPPNGTHKPGVHPTGFPMPRVPIPPFHGGPPSQPYAIPTR
GAVHRPVGAVPHVPAPGSRGFGAGRGSAGAPIGSHLPHQQSTQQTIGNMGSTFNFPALEN
PNSQPSVGGPLSQPGYVNNMPVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSQVPYNVAE
FSTQASQSGYAVDYVTQGAQGGFPGNFMNQNSQAGFSRFGSGNDFMSQDYMAHGSQGLFT
QIGFNDPSQDESSQSHFGIANPNPLQSQGLMNSLYSQPFAHYNTQPLNLQSPQQPLQGQG
SQNQKIHYNG
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggattcagagcagagcaacctttacgaaacggcgtcgcagccggacacgggaactgac
gcctacaccttcctcgaattcaacactcaaggcgaatctgacttcgattatcccgaattc
cgctctccagtggcctggcccactccttccgattcgcttgccgccacctcctcctcttcc
gctgtggaccccgccacttccgaccaccgcgccgctgcgtcctcctctgatcatcattct
gattctcccgcagcctccccggtgtcatcaaaagccgcacgcggcgggggtgggaataat
actcaggctgttgatgggatagtagccagtatgggagggttgaatttcgaggagactggg
gacgaggatggatatgagttcgggaaaggagactttacggaacatgcttgtaggtattgc
ggtgtttcaaacccagcgtgcgttgtgaggtgcaatgttccgtcatgcagaaagtggttt
tgtaattctagagggaacacatctggctcgcatattgtcaatcacctggttcgtgcaaaa
cacaaggaagtctgcctccacaaagacagccccctgggcgagacgatacttgaatgttac
aactgtggatgtagaaatgttttccttcttggatttatatcagccaagactgaaagtgtt
gttgttcttctttgccgggaaccttgcttgaacgtcaatgcattgaaggacatgaactgg
gatttaagccagtggtgccccctcattgatgacaggtgctttctacagtggcttgttaag
ataccttcagagcaggagcagctgagggcacgtcaaattagtgctcagcaaataaataaa
gtagaagaactttggaaaacaaatcctgatgctacccttgaagatcttgagaagcctggt
gttgacgatgagcctcagccagtggcattgaagtacgaagatgcatatcagtatcaaaat
gtgtttgctccgctaattaagcttgaggctgattatgataaaatgatgaaagagtctcaa
agcaaggacaatgtaactattcgatgggacattggtcttaacaagaagcgaattgcgtat
tttgtgtttccgaaggaggacaatgagttgcgtcttgtacctggggatgagctgcgacta
cggtattctggagatgctgctcatccagcatggcagtcagttgggcatgtgatcaagcta
actgcacaggaggaggtagcacttgagcttcgtgctagtcagggagttcctgttgatata
aaccatggtttcagtgtcgattttgtatggaagagtacgagctttgataggatgcaaggg
gcaatgaaaacttttgcagtggatgaaacaagtgttagtggatacatataccatcatttg
ctgggacatgaggttgagagtcaaaatgttcgtaatacactcccacgccgttttggtgca
cctggtcttccggagctgaatgcatcccaagtttttgctgtaaagagtgttcttcagaga
cctataagtttgattcagggtcctcctggcactggaaaaactgtcacctctgctgccatt
gtttatcacatggccaaacagggtcaaggacaggttttggtatgtgctccaagtaatgta
gctgttgaccaactggctgagaagatcagtgccactggcttaaaggttgttcgactatgt
gcaaaatcaagggaagctgtaagttcccctgttgagcatctaacccttcattatcaggtt
agacatcttgacacttctgaaaagagcgaacttcacaagttgcaacaattgaaagatgaa
caaggagaactgtccagcagtgatgagaagaaatacaaagcacttaagcgtgcaacagag
agggagatttctcaaagtgctgatgtcatttgttgtacttgtgttggtgctggagatcct
cgacttgcaaattttaggttccgccaggtgcttattgatgagtctactcaagcaacagaa
ccggagtgtcttattcctttagttcttggggcaaagcaggttgtccttgttggtgaccat
tgtcagctcggtccagtcattatgtgcaagaaagcagctcgtgctgggctagctcagtct
ctttttgaacgtcttgttttgctgggtgtgaaaccaataaggctgcaggttcaataccgt
atgcatccatctctctcagaatttccatccaacagcttttatgaaggtaccctgcaaaat
ggagtgacggttaatgagaggcaatcatcgggcattgattttccttggcctgtacctaat
cgtcccatgttcttttatgttcagatgggacaagaggaaataagtgctagtggaacgtcc
tatctaaaccgtactgaggcagccaatgttgaaaaaattgtaaccactttcttgaggagt
ggtgtggtccctaatcagattggggtaataacaccatatgagggtcagagagcatatata
gttaactatatgtctagaaatggagctctcagacaacaactgtacaaagaaattgaggtt
gcaagtgttgattcatttcaaggaagggaaaaagattatattattttgtcttgtgttagg
agtaatgaacatcagggtattggatttcttaatgatcctcgtaggctgaatgttgctcta
acacgtgctagatatgggattgtcatcctgggaaaccctaaagttctcagcaaacaacct
ttgtggaatagtttattgacacactacaaggaacatgagtgcttggtggaaggacctcta
aataacttgaagcagagtatggttcagtttcaaaagcccaagaagatctataatgatagg
aggctcttctttggtggtggacctggaattgtgtctaatgacaattttggttctgttgcc
tcatctagtccaaatgctgatagaagaagctctcgtggcaggggttcatatatgccacct
gggccaccaaatggtacccataagcctggtgttcatcctactggcttcccaatgcctcgg
gttcccattcctccatttcatggtggtccgccttcccaaccttatgctattccaactcgg
ggagctgtgcacaggcctgttggagctgttcctcatgtccctgcaccaggaagtcgaggt
tttggggctgggcgtgggagtgctggtgctcctattggaagtcatcttccccatcagcaa
agtacgcaacaaactattggaaatatgggatctactttcaactttcccgcccttgagaat
ccaaatagccagccatctgtgggcggtccactatctcagcctggatatgttaataatatg
ccagttcaagggccgagccaaacatttcgtgatggattttctatggggggcatgtctcag
gacttcctgggtgatgacttcaaaagccagggatcacaagttccttataatgttgctgag
ttctccactcaggcatcacaaagtggttatgctgttgattacgttacgcaaggagcacag
ggtgggttcccgggcaacttcatgaatcaaaattctcaagctgggttttctcgttttggt
tctggaaatgatttcatgtctcaggactacatggctcatggatcgcagggtctatttact
cagattggcttcaatgatccttcacaagatgaatcatcacagagccactttggcatagcc
aacccaaacccgcttcagtcccagggcttgatgaattctctctactctcagccctttgct
cactacaacacacagccactaaatttgcagtctccacagcagcctctgcaaggtcaaggc
tcccaaaaccagaaaattcactacaatggttga
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integrated database retrieval system
