Jatropha curcas (Barbados nut): 105636570
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Entry
105636570 CDS
T03922
Name
(RefSeq) uncharacterized protein LOC105636570
KO
K19026
spatacsin
Organism
jcu
Jatropha curcas (Barbados nut)
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105636570
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
105636570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
105636570
NCBI-ProteinID:
XP_012075268
LinkDB
All DBs
Position
Unknown
AA seq
3203 aa
AA seq
DB search
MDYFLDGETPATLQLHRWGPSEFPLNLSEFREAFISPTRELLLILSYQCEALLLPLVTGE
PIDNISEICHNECVENDPLTTFCSRSSLESSTPAHASADGLDNGFSVEHKFSRSNSYPYV
CDVNSLAWGVCGDTYNLHEDVLFREFLFVCSGYGVTVHAFRDPGKTAMSRSSLEGDYGQG
RWVEWGPSSTSAQNIKSQDSCSLYSGGTSSNPVVSKSNGDRESLQDVYKEKGVASKRWLH
SFFTKAETIKSDGNIWTRFPEKPSFPCCAKVVSFSILDKNLPVLDFLSHGNSASNMEESQ
RETGLDPVSSMIASDSFGANSYKCSRVFSSNSHCLIGFVLTLTDSDSLFVHTPNEIERSK
INILLLVARLGTLGIQWVSMVKLAESVNVDPMTEWTDFCFSDDLLVCLKASGSINFYAAM
SGKCVGHVDVFQACGFNPRSSRQLQQKVSVVDTQIKSVDEIHEKLTSQHGDLFGRGIFRK
LLVAAHTSLLAVVDEYGIIYVVCAGDYLPDNYYAYEKLLPHFQHFGLGIFVGWEVGGSEI
GHQRVYPNKSFMRKGDAPCADYNGSKSLWTIQQGNMHGLGSQGDFCSNVFSAASECKSCD
PKGHSHPMRKIFLPPERFSEDDCICFSPLGITRLTKKHNIKNQRTANLIHLNRHMGLVVH
DDRYLDSGGKMFYCGGDEEASVGEAIGCSFQGCFYLVNKAGLSVVLPSMSFSSNFLPVET
IGYRQRSFYTDTVSPARRTLQIMESKELFSAWKVEVLDRVLIYEGPEEADRLCLENGWDI
KNSRIRRLQMALDYLKFDEIEQSLEMLASVNLAEEGILRLLFASVYLMCHKNGSDSEVSA
ASRILALATCFTTKMIRNFALLRQKNGTLQNFRKTQLPSLPPVLPEKVNKMEGSRRLHDM
ARLLEIIRNLQYRLRAKVKKPGQGLADAGEALNFMDADFSEDECQTSVIPANAVSMETLN
QQELSISVSMGSKNEKLALMSKDALDSDSHLDQDDSTAVSEFVTQAGNLGRKVFPLENPQ
EMIARWKLDNMDLKTVVKDALLSGRLPLAVLQLHLHRSRDLDTDEEPSDTFKEVRDVGRA
IAYDLFLKGETAHAIATLQRLGEDIETCLKQLLFGTVRRSLRNQVAEEVRRYGYLGPYDW
KMLEILSLIERLYPSSSFWKTFLGRQKALMKATSTSNSTSGITLQLLYTHLFGNLTIDCG
EIDGVVLGSWTSINENTPDPVVDEDTAHAGYWNAAAVWSSVWDQRTIDRIVMDQPLLMGV
HVLWESQLEYHLCHNDWEEVFKLLDLIPTSVLSVGSLQITLDDLKHSPAVGCSSELPEYS
NYICPIEEVDAVCMDVPGVKIFRFSVDSMCSMWLRILMEQELAKKFIFLKDYWEGTAEIV
ALLARSGFITSKFNKMSSEDHSVKSLSDLSASSGGNFDFDTTQALHKLVVHHCVQYNLPN
FLELYLDHHKLVLDSDSLYFLQEATGDCQWAKWLLLSRIKGHEYDASFCNARSIMSHDSN
LSVLEIDEIIRTVDDIAEGGGEMAALATLMYAPNPIQNCLSSGSVLRHSRSTSQCTLENL
RPILQRFPTLWRTLVAASFGQETSNFLGSKTNNALSNYLCWRDNIFFSSARDTSLLQMLP
SWFPKTVRRLIQLYIQGPLGWQSFSGLPIGESLLDREIDFYIHADESTEISAVSWEATIQ
KHVQEELYDSSLGETGHGLEHHLHRGRALAAFNHILGVRVQKLKLEGQSGATSHGQTNVQ
SDVQKLLAPIAHSEEAILSSVIPLAITHFQDSVLVASCAFLLELCGLSVSMLRVDIAALR
RISSFHKLNQSNEKYGQFSPKYSALHVSDGAGMIDSLARSLADEYLRKDSASDAKLKRAT
GFLSSERSSRALMLVLQHLEKASLPGMMDGRTSGSWLLTGNGDGAELRAYQKAASQRWNL
VKVFCQMHQLPLSTKYLAVLARDNDWVGFLSEAQSGGYSFDTVIQVATKEFSDPRLKIHI
LTVLKGMQSRKKAGSPSYSDIVEETSCSNDSVLIPVELFRILADCEKQKDPGEALLRKAK
EMSWSLLAMVASCFPDVSPLSCLTVWLEITAARETSAIKVNNIASQVADNVGSAVEATNS
LPVGNRAVTFHYNRQNPKRRRLLEPISVDPLVATADGSRTHSPKVSVAKVTGEEERKDGV
SEHINLSNDSEEGPLSLSKMVAVLCEQHLFLPLLKAFEMFLPSCPLLPFIRALQAFSQMR
LSEASAHLGSFSARIIDEASAFQSSIGREGQTGASWLSSTAVKAANSMLSTCPSPYEKRC
LLQLLAATDFGDGGSAATYYRRLYWKINLAEPLLRKDDGLHLGNETLDDASLLTALENNG
HWEQARNWAKQLEASGGPWKSAVHHVTETQAESMVTEWKEFLWDVPEERVALWGHCQTLF
IRYSFPPLQAGLFFLKHAEAVEKDLPARELHELLLLSLQWLSGMITLSNPVYPINLLREI
ETRVWLLAVESEAQVKSDGDFTTTTSSRDPVNGNTSNIIDKTANLITKMDIHINSMSNRT
VEKHDARENILGLQKNQVLDASTPTAGFSLKAKRRAKTYLPSRRPFMESTDKNADPEDVS
VGHTSKNDLQLQDENFKLEISFSKWEERVGPAELERAVLSLLEFGQIAAAKQLQHKLSPE
STPSEFVLVDAALKLAAISTPCSKVSPSELDEEVHSVVQAYNIFTDQHLVDPLEVLESLT
TIFTEGSGRGLCKRIVAVVKAANILGLSFSEAFEKQPIELLQLLSLKAQESFEEASLLVQ
THSMPAASIAQILAESFLKGILAAHRGGYMDSQKEEGPAPLLWRFSDFLKWAELCPSQPE
IGHALMRLVITGQEIPHACEVELLILSHHFYKSSACLDGVDVLVALAATRVEAYVSEGDF
PCLARLITGVGNFHALNFILGILIENGQLDLLLQKYSAAADTNAGTAEAVRGFRMAVLTS
LKHFNPKDLDAFAVVYNHFDMKHETASLLESRAWQSCEQWFHRYDKDQNEDLLESMRYFI
EAAEVHSSIDAGNKTCRTCAQASLVSLQIRMPDSRWLSLSETNARRLLVEQSRFQEALIV
AEAYGLNQPSEWALVLWNQMLKPELTQEFVAEFVAVLPLQPSMLVELARFYRAEVAARGD
QSQFSVWLTGGGLPAEWAKYLGRSFRCLLKRTRDLRLRLQLATIATGFGDIIDACVKALD
KVPDTASPLVLRRGHGGAYLPLM
NT seq
9612 nt
NT seq
+upstream
nt +downstream
nt
atggattactttcttgacggtgagactccagctaccctgcagctccacagatggggcccc
tctgagtttccactgaacttatcagagtttcgtgaagcttttatttctccgacaagggag
cttctattaattctgtcttatcaatgtgaagctttgctgcttcctttggttactggggag
cccattgacaacatttcagaaatctgccacaatgaatgtgtagaaaatgatcctttgacc
actttctgttcccgatcatcattggaatcttcaactcctgctcatgcatcagcagatggt
ctcgataatggtttttctgttgagcataaattttcaagatctaatagttacccttatgtt
tgtgatgtgaactcactggcttggggtgtatgtggggatacctataatctgcatgaagat
gttttgttcagagagtttttattcgtgtgcagtggctatggtgtcacagtgcatgctttt
cgtgaccctggtaaaactgcaatgagcagatcctcattggagggtgattatgggcagggg
aggtgggtggaatggggcccttcctctacatcagctcaaaatatcaaatctcaggactct
tgcagcttgtattctggaggcactagctctaatccagttgttagcaagagcaatggagat
agagagtctttgcaggatgtgtacaaagaaaaaggtgttgcttcaaagaggtggctgcat
tcatttttcactaaagctgaaactataaaatctgatggtaacatctggactaggtttccg
gagaagccatcatttccatgctgtgcaaaggttgtttcatttagcattcttgataagaat
ttgccagttcttgactttctttctcatggaaactctgcgtctaacatggaagaaagtcag
cgtgaaactggtttggatccagttagtagtatgatagcttctgatagttttggtgccaat
tcatacaaatgttccagagtgttttccagcaattcacattgcctaattggatttgtttta
acattaacagattcagattctctttttgtccatactccaaatgagattgaaagaagcaag
ataaatattctgcttcttgtggctaggttaggtactttgggaatccagtgggtttccatg
gtgaagcttgcagaaagtgtaaatgtagaccctatgactgagtggactgacttttgcttt
tctgatgaccttcttgtttgcctaaaggcttctggttcaattaatttttatgctgcaatg
tcgggcaagtgtgttgggcatgtggatgtttttcaagcttgtggatttaaccctcgatct
agcagacagctgcagcaaaaagtgtctgtagttgatacacaaattaaatctgttgatgaa
attcatgaaaagttaacttctcaacatggcgatttatttggtagaggaatatttagaaag
ttgcttgttgctgcccatacttccttgttagctgtagttgatgaatatggtattatttat
gttgtttgtgctggtgactatctgccagataattactatgcatatgagaagctacttccg
cattttcaacattttgggcttggcatatttgttggttgggaagttggtggttctgaaata
ggccaccagagggtatatcctaataagtcattcatgaggaaaggagatgcaccatgtgcg
gattataatggcagtaagtcactctggacgatccagcaagggaacatgcatggcctgggt
tcccagggtgacttttgctcaaatgtcttttctgctgcatcagaatgtaagtcttgtgat
cctaagggacattcacatccgatgcggaaaatttttcttcccccagaaagattcagtgag
gacgattgtatctgtttttcacctttgggaatcactcggcttaccaagaagcacaatatt
aagaatcaaaggactgctaatctcattcacttaaatcggcatatgggtttagtggttcat
gatgacagatatttggattctgggggaaaaatgttttattgtggaggggacgaagaagcc
tctgttggagaagcaattggttgctcttttcagggatgtttttatttagtgaacaaagct
ggcctttcagttgttcttccctctatgtctttttcatctaatttccttcctgttgaaact
attggatatcggcagcgcagtttctatacagacactgtttctccagcaagaagaactctt
caaataatggaatcaaaagagctcttctcagcttggaaggttgaagttttggatagagtt
cttatttatgaaggccctgaagaggctgatcgtctatgtttggaaaatggctgggacata
aaaaattccaggatacgtcggctacaaatggcactggactacctgaaatttgatgaaata
gaacaatctctagaaatgcttgcgagtgttaatttggctgaagaaggcatcttgagattg
ctgtttgcttctgtatatttgatgtgtcataaaaatggaagtgacagtgaggtttctgct
gcatcaaggattcttgcattggccacttgcttcacaaccaaaatgattcgaaattttgct
ctacttcggcaaaaaaatggcacattacaaaattttaggaagacccagttgccctctctt
ccaccagttttaccagaaaaggtaaacaaaatggagggctcaagaaggcttcatgatatg
gctcgccttttggagatcatccggaatcttcagtatcgacttagagcaaaagtgaaaaag
cctggccagggattggcggatgctggtgaggcattaaatttcatggatgctgatttttca
gaggatgaatgtcaaacttcagttattcctgctaatgctgtatcaatggagacactaaac
caacaagaactttcaatttctgtgtccatgggctccaagaatgagaagcttgcgttgatg
tccaaggatgccttggattctgattcccatttggatcaagatgattctaccgcagtgtca
gaatttgtgacacaagctggaaatttgggaaggaaagtatttcccttggaaaatcctcag
gagatgattgcacgatggaagttagataatatggaccttaaaactgtggttaaagatgct
cttctctctggtcgtctgcctttagcagttcttcaattacatcttcatcgttcaagagac
ttagatactgatgaggagccttctgatacttttaaagaagttcgtgatgttggaagagcc
attgcttatgacctatttttaaagggtgaaactgcgcatgctattgcaacattgcaaagg
cttggagaggacattgaaacctgcctcaagcagttgctatttggtacagtgaggagatcc
ctccggaatcaagttgcagaagaggtgagaagatatggttacctgggaccatatgactgg
aagatgttggagatattatcactaatagagaggctgtatcctagcagtagtttctggaaa
acctttcttggtcggcagaaggcattgatgaaagccacatcaacttcaaattcaaccagt
ggaattacgctacagttattatatacgcatctatttggcaatcttaccattgactgtggt
gagatagatggagttgttttaggctcatggacaagcatcaacgaaaatactcctgaccct
gtggttgatgaagatactgctcacgctggatactggaatgctgctgcagtgtggtctagt
gtctgggatcagagaactattgatcgtatagttatggatcaaccgctccttatgggtgtt
catgtattatgggaatctcagctggagtatcatttatgccataatgactgggaggaggtt
tttaaacttttggaccttattcctacatctgttttatcagttggaagccttcaaatcact
ttggatgacttaaagcattcaccagctgttggatgtagcagtgaacttcctgagtacagc
aattatatatgccctattgaagaagtagatgcagtatgcatggatgttccaggagtcaaa
atattcaggttttctgtagattcaatgtgctccatgtggttaaggatactgatggaacag
gagcttgcgaagaaatttatttttttaaaagattattgggaaggcactgcagaaattgta
gctttactagctcgttcaggcttcataactagcaaatttaataaaatgtcatcagaggat
cattctgtgaagagtttgtctgatctgagtgcatcaagtggtggaaattttgattttgat
accacacaagctttgcataaattagtcgtgcatcattgtgtgcaatataacttgccaaac
ttcttggagctatatcttgaccatcacaaattggtgctggacagtgattcactctacttt
ttacaggaagcaacaggagattgccaatgggcaaaatggttgcttctatctaggattaag
ggtcatgaatatgatgcatcattttgtaatgctcggtctataatgtcgcatgatagcaac
ctcagtgttctggagattgatgaaataattcgtactgttgatgatattgcggaaggaggg
ggtgaaatggcagctttagcaactctgatgtatgcccctaatccaattcaaaattgcttg
agtagtggcagtgtgttaaggcatagtcgctccacatctcagtgcactttggaaaacctt
aggccaattttacaacgctttcctacattgtggcgaacacttgtagccgcaagttttgga
caagagacttctaatttcttgggctcgaaaacaaacaatgccctgtcaaactacttgtgt
tggcgtgacaatatcttcttctcttctgcccgtgatacttcacttctacaaatgctgcca
tcttggtttcctaaaactgtgcggaggttgattcaactgtatatccagggtcctcttgga
tggcaatcgttctcaggcctgcctataggagagtctttgttggatagagaaattgatttt
tacatacatgctgatgaaagtactgagataagtgctgtctcctgggaagcaacaatacaa
aagcatgttcaagaggaactttatgattcctcacttggggaaactggacatgggcttgag
caccatttgcatcgtggccgtgcacttgcagcttttaatcatattcttggtgttagagtt
caaaagttgaaactggaaggccaatctggtgctacatcacatggacaaacaaatgtccaa
tcggatgtgcaaaaacttctagcacctatagcacacagtgaagaggctattctttcatct
gtcatcccacttgcaattactcattttcaggattctgttctggtggcatcatgtgctttt
ctattggagctttgtggtttgtccgtaagcatgcttcgtgtagacattgctgccttgagg
cggatatcttcatttcacaaattaaatcaaagtaatgagaaatatggtcaattttcacct
aaatactctgcattgcatgtgtctgatggagctggcatgatagattctctggctagatca
ctagcagatgaatatctgcggaaggatagtgcaagtgatgctaagctaaagagggcaaca
ggtttcttgtcaagcgaacgctcttctcgagctctcatgctagtcctacagcatttggaa
aaggctagcttaccagggatgatggatggaaggacaagtggatcttggctgctaactggt
aatggtgatggagctgaattaagggcttaccagaaagctgcaagtcaacgctggaattta
gttaaagttttctgtcagatgcaccagcttcccttaagcacaaaataccttgctgtattg
gcaagagataatgattgggttggatttctgtctgaagctcagagtggtggatactctttt
gatacagttattcaagtggcaaccaaggaatttagtgatccccgcctcaaaattcatatt
ttaacagtcttgaaaggcatgcaatcaagaaagaaagctggttctccttcttactcagat
atagtggaagagacgtcctgttcaaatgatagtgtactcatacctgttgaactctttaga
attttagcagattgtgagaagcaaaaagatcctggagaggccctcttgaggaaggcaaaa
gagatgtcgtggtcacttttggcaatggtagcatcatgctttccagatgtgtctccatta
tcctgcctaacagtttggctggagattacagcagcaagggaaacttcagccatcaaggtg
aataacattgcttcccaggttgctgataatgttggatcagctgtggaagctaccaattcc
ctgccagtgggtaatagggctgtaacatttcattacaaccggcagaatccaaaacgtaga
cgtctcttggagcccatctctgtggatccattggttgcgactgctgatgggtcaagaact
catagtccaaaagtatctgtagcaaaagtaactggtgaagaggaaagaaaagatggagtc
agtgaacatattaatttatcaaatgattccgaagaagggccgctgtctctctcaaagatg
gtggcagtgctttgtgaacaacacttgtttctgccgttgttaaaagcttttgaaatgttt
ctcccttcatgtcctttgctgcctttcatccgtgcgctacaggcattttcacaaatgcgg
ctatctgaagcttcagctcatctgggttccttttctgccaggataattgatgaagcatcc
gctttccaatcaagtattggaagagaagggcagactggagcatcatggttaagttccact
gctgtaaaagctgccaattccatgctttccacttgtccatctccttatgaaaaaagatgc
ttgctacagctccttgctgcaactgactttggcgacggaggatcagcagctacatattat
cgacgactttattggaaaattaacttggcggagcctctgttacggaaggatgatggtcta
catcttgggaatgagaccctagatgatgcttcacttttaactgcactagaaaataatgga
cattgggagcaagcacgcaactgggccaagcaattggaggccagtggcggaccatggaag
tctgctgttcaccatgttactgaaactcaggctgaatccatggtaactgaatggaaggag
tttctttgggatgttcctgaagagagagttgctttgtggggccattgtcagacactgttc
ataagatattcctttcctcctttacaggctgggttatttttcctaaaacatgctgaagca
gtggagaaagatcttccagcaagagagcttcatgaactgcttctgctttctcttcagtgg
ttaagcggaatgataactctgtctaatcctgtttatcccataaatcttctccgagaaatt
gagaccagagtatggctcttggcagtagaatcagaagctcaggtaaagagtgatggagat
ttcacaaccaccacttccagccgggatcctgtaaatggaaatacttccaatatcattgac
aagactgcaaatttaataacaaagatggacattcatataaattcaatgagtaatagaact
gttgagaaacatgatgcgagggaaaacatattaggacttcagaagaaccaagtactggat
gccagcactccaacagcaggattcagtttgaaggcaaagaggagggccaaaacttatttg
ccatcaagacgaccgtttatggagtcgacagataaaaatgctgatcctgaagatgtttcg
gttggtcacacttccaaaaatgacttgcagttgcaagatgaaaacttcaagttagaaatt
tctttttctaaatgggaggaaagggttggacctgcagagctagaaagggctgttctttct
ctactggagtttggacaaatagcagctgccaagcaactccagcataagctgtctccagaa
agcactccttcagagtttgtgcttgttgatgctgctctaaagcttgctgctatctcaact
ccttgtagcaaagtttctccgtcagagcttgatgaggaagtgcattctgttgttcaggcg
tataatatattcactgatcagcatctggtcgatccactagaggtgttggagagtttaaca
actatatttactgagggtagtggacgcggtctgtgtaagagaatagtagctgtcgtaaaa
gctgcaaatattctgggtctctctttttccgaggcatttgagaagcagccaattgaattg
ctgcagcttctttctcttaaagcacaggagtcatttgaagaagcttctttgttagtacaa
actcattccatgccagcagcaagtattgcacagattctggctgaatcctttttaaagggt
atattggctgcacatcgtgggggatatatggattctcagaaggaagaaggacctgctcct
ctattgtggagattttcagactttttaaagtgggctgagctttgcccttctcaacctgaa
attggccatgcattgatgcgtttggtgatcacaggacaagaaattccacatgcatgtgag
gtggagcttcttattctgtctcaccatttctacaagtcatcagcttgccttgatggagtt
gatgtcttggtagctcttgctgccactagagttgaagcctatgtctctgagggtgatttt
ccatgtttggctcgattgataactggggttggcaatttccatgcccttaatttcattctt
ggaattctcatagaaaatggtcagctggatcttctacttcagaagtattcagctgctgca
gacacaaatgcaggcactgctgaggctgtaagaggatttcggatggctgttttgacatca
ttaaagcatttcaacccaaaagatctggatgcatttgctgtggtgtataaccactttgac
atgaagcacgaaacagcttctcttttagagtcacgagcgtggcagtcttgtgagcaatgg
tttcatcgttatgacaaggatcagaatgaagatctccttgaatctatgcggtatttcatt
gaagcagctgaagttcactcttccattgatgctggcaataaaacttgcagaacttgtgct
caggcttcccttgtttcccttcaaattcgaatgccggattccaggtggctaagtttatct
gaaaccaatgccaggcgattattggtagagcaatcccgttttcaagaggccttaattgtt
gccgaagcgtatggtctcaaccaaccaagtgagtgggctttggtgctttggaatcagatg
ctaaagccagaactaacacaagaatttgtggctgaatttgttgctgttcttccactccaa
ccttcaatgctcgtggaactggctagattctatagggctgaggtagcagccagaggtgac
caatcgcaattctcagtgtggctgaccgggggagggttacctgcagaatgggctaaatac
ttgggcagatcattccgatgcttgttgaagaggactagggatctgcggttaaggttacag
ctcgctacaatagcaactggttttggtgacattatcgatgcatgtgtcaaggcactcgac
aaggttcctgatactgccagcccccttgtactgaggagaggtcacggtggagcttacctc
ccattgatgtga
DBGET
integrated database retrieval system
