Jatropha curcas (Barbados nut): 105636862
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Entry
105636862 CDS
T03922
Name
(RefSeq) LOW QUALITY PROTEIN: 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105636862
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105636862
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105636862
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105636862
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
105636862
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
TERB2
Motif
Other DBs
NCBI-GeneID:
105636862
NCBI-ProteinID:
XP_037491976
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MEDTEGGLSFDFEGGLDSGPTNPTASLPAIPSDNTAAAAATNNNSVVSTVSSTDPAAAGA
NQPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSHNYGSSNKFFQQR
GAGFQQHTEKSQFSQGPNNMGQVVTGKPSGPESVNVQQPQQQQQQQQQQQQQQLQQQQQQ
HQQQQQQGQQSQQQAPQAQTQNLPNGQPIQASRIAMPLPQGISRYFIVKSCNRENLELSV
QQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSKIGASVGGGNWKYAH
GTAHYGRNFSVKWLKVHLCLCRLSFPXNSHLRNPYNENLPVQISRDCQELEPSVGEQLAS
LLYLEPDSELMAVSVAAEAKREEEKAKGLNPDNGGENPDIVPFEDNEEEEEEESDEEEES
FGQALGPAGQGRGRGRGIMWPHMPLARGARPMPGMRGFPPMVMGADGFSYGPVAPDGFGM
PDLFGVAPRGFTPYGPRFSGDFTGPASGMMFPGRPSQPGVFPAGGFGMMMGPGRAPFVGG
MGPTTTNPLRGSWPPGGMPFPPIPNPSTQNTIRPVKRDQRTTTNDRNDRYSAGSEQGRGT
AGGQEDDGQFQHEGIKASHEDQFGAGNSFRNDDSESEDEAPRRSRHGEGKKKRRGSEGDA
TPGSDH
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggaggacacagaaggaggtcttagcttcgatttcgaaggaggccttgactccggtccc
accaatcccactgcctccttgcccgccatcccttccgacaacactgccgcagccgctgcc
actaacaataactccgtcgtctctactgtctcttctactgacccagccgcagccggcgcc
aaccagcctgggcggcggagcttccggcaaactgtttgtcggcattggctgcgtagcctt
tgcatgaaaggcgatgcctgtggtttccttcaccaatacgataagtctcgaatgcctgtt
tgcaggttctttaggctttacggagagtgccgagagcaggattgcgtgtataagcatacc
aatgaggatattaaggagtgcaatatgtacaagctagggttttgtccaaacggtcctgac
tgtcggtataggcatgcaaagttgcctggacctccacctcctgtagaagaagtccttcag
aagattcagcaattgaattctcacaattatggatcctctaacaaattttttcaacagagg
ggtgctggttttcagcaacatacagaaaaatctcaattttcacaaggtcccaacaatatg
ggtcaggttgtaacaggaaaaccctcaggaccagagtctgttaatgtgcagcagcctcag
cagcagcagcaacagcagcagcagcagcagcaacagcagctgcagcaacagcagcagcaa
catcaacaacaacaacaacaagggcaacagtctcaacagcaagcccctcaggcccaaaca
caaaatcttccaaatggtcagcccattcaagcaagcagaattgcgatgcctttgcctcaa
ggaatatctaggtattttattgttaaaagttgcaaccgcgaaaatttggaattgtctgta
caacaaggagtttgggcaactcaaaggagcaatgaagctaaattgaatgaagcttttgac
tctgctgaaaatgtgattttaattttctcagttaatcggactcgacatttccagggatgt
gcaaagatgacatccaaaattggtgcatctgttggtgggggaaattggaaatatgctcat
ggaactgcacattatggacggaatttctcagtcaaatggttgaaggtacatctatgttta
tgcagattatcattcccataaaactcgcatttgaggaacccatacaatgagaacttaccg
gtgcagatcagcagagattgtcaagagttagagccctcagttggtgagcagttagcttca
ttactttatcttgagccagatagtgaactcatggcagtctcagttgcagcagaagcaaaa
agagaagaggaaaaagctaagggattgaatccagacaatggaggggagaacccagatatt
gttccatttgaagacaatgaagaagaagaagaggaagaaagcgacgaagaggaggagagc
tttggccaggctcttgggccagcaggtcaagggcgaggcagaggcaggggaatcatgtgg
cctcacatgccactggcccgtggagctagacccatgcctgggatgcgaggctttccccca
atggtgatgggtgctgacgggttttcttacggaccagtggcacctgatggttttgggatg
cctgatctttttggtgtagcgcctcgtggttttactccatatggtccaaggttttctggt
gactttacaggccctgcatctggcatgatgtttcctgggcgaccttcccaacctggggtt
tttccagctggtggatttggcatgatgatgggtccgggacgtgctccttttgttggaggg
atgggccccactactacaaatccacttcgaggcagttggccaccagggggtatgccattt
ccaccaatacctaatccatctactcaaaacaccatcagacctgttaaaagagatcagcgg
acaactactaatgatcggaatgacagatatagtgcaggatcagaacaaggcaggggtaca
gctggcggacaggaagatgatggacagttccagcatgaaggaataaaggcttcccatgaa
gatcaatttggtgctggaaacagctttcgaaatgacgacagtgaaagtgaggatgaggca
ccaaggcgatcgaggcatggggaagggaagaagaagcgacgaggctcagaaggagatgca
actccaggttctgatcactaa
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integrated database retrieval system
