Jatropha curcas (Barbados nut): 105636912
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Entry
105636912 CDS
T03922
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105636912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105636912
03012 Translation factors [BR:
jcu03012
]
105636912
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105636912
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105636912
Translation factors [BR:
jcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105636912
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
ATPase
Dicer_dimer
ABC_tran
AAA_11
Menin
Motif
Other DBs
NCBI-GeneID:
105636912
NCBI-ProteinID:
XP_012075701
LinkDB
All DBs
Position
Unknown
AA seq
1229 aa
AA seq
DB search
MLSSLLFNLPFQQIPLNSHRKTLKPSLSPSSSTAMKDRSPSSYGAVYVPPHQRLRSIITV
QNYSSASSASPIECKVPDNQTAAALNPIKSSPAPHFQQQQQQQQQRRNGFGDSNHFNNNN
DNVNNNSNNNNHKFISAYDDGVSEEGSDREIESLMVPPGASFSDNIEEWKRKLTMLLRDK
EKQELVSREKKDRHDFEQIAALASRMGLYSHLYVKVVVFSKVPLPNYRFDLDDKRPQREV
SLPLGLLRRVDAYLGEHLFQKSKTKESFPDFSISRSSSSSSLATDEGLFEQPEPLASSKA
VMEKILFRRSLQLRDQLQAWQDSLEGRKMLEFRKSLPAYREKDAILTTVSQNQVVIISGE
TGCGKTTQIPQFILESEIESGRGAVCNIICTQPRRISAMSVSERVASERGEKLGECVGYK
VRLEGIKGRDTHLLFCTTGILLRRLLCDRNLKGITHVIVDEIHERGMNEDFLLIVLKDLL
PRRPELRLILMSATLDAELFSSYFDGAPILRIPGFAYPVQTHFLENILEMTGYRLTLYNQ
IDDYGQEKMWRTSKQAPRKRKSQIASAVEDALRAADFKEYSPQTRESLSCWNPDCIGFNL
IEYLLCYICENEKPGAVLVFMTGWDDISSLKDKLSSHPILGDPSRVLLLACHGSMASSEQ
KLIFDDPKEGVRKIVLATNIAETSITINDVVFVLDCGKAKETSYDALNNTPCLLPSWISK
VSAQQRRGRAGRVQPGQCYHLYPRCVYEAFAEYQLPEILRTPLQSLCLQIKSLKLGSISE
FLSRALQSPEFLAVQNAIEYLKIIGALDEKENLTVLGRYLTVLPVEPKLGKMLILGSIFN
CLDPILTIVAGLSVRDPFLTPLDKKDLAEAAKSQFSRDYSDHLALVQAYEGWKDAERDFA
GYDYCWKNFISVQSMKAIDSLRKEFFSLLKDAGLVDSNTTTYNSWSYEERLIRAVICYGL
YPGIASVVHNEKSFSLKTMEDGQVLLYSNSVNARESKIPYPWLVFNEKIKVNAVFLRDST
AVSDSVLLLFGGSISKGDTDGHLKMLGGYLEFFMKPDVAEIYQSLRRELDEFIQTKLLNP
RMAIHTYHELLSAIRLLVSEDQCDGKFVFGHQVLKPSKVSVMATQPNLVSRTESGPGGDN
SKSQLQTLLTRAGYAAPLYKTKQLKNNQFRATVEFNGMQIMGQPCNNKKSAEKDAAAEAL
QYLMAGTQTGQEYINHVSMLLKKSKKDHY
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgctctcttcccttctctttaatctaccatttcagcaaattcccttgaactcacaccgg
aaaaccctaaaaccctcactttccccttcctcctccactgcaatgaaggaccggtcgcct
tcttcgtacggcgccgtttatgtccctcctcaccagcgtctccgttccatcatcaccgtg
cagaattatagctccgcctcttctgcttctccaatcgagtgtaaagttcctgataatcag
accgctgctgctttaaaccctataaagagctctcctgcacctcactttcaacaacagcag
caacagcagcagcagcggaggaatggctttggtgatagtaatcattttaacaacaacaat
gataatgttaataacaacagcaacaataataaccataagttcatttctgcctacgacgat
ggagtctctgaggaaggatccgatcgtgagatagagtccttgatggttccacctggtgct
tccttttcagataacattgaggagtggaaacggaagttaaccatgcttttgcgagacaag
gagaagcaagagttggtctcaagggaaaagaaagacagacatgattttgaacaaatagca
gctttggcaagtagaatgggtttgtatagccatctgtatgtgaaagttgttgtatttagt
aaggtccccttgccaaactacagatttgatttggatgataagcgtccacagagggaggtg
agcttacctcttggtttgctaagaagagttgatgcttatcttggagaacacctctttcag
aagtccaagacgaaggaaagctttccagacttttccatttctagatcaagcagcagtagt
agtctagctactgatgaagggctttttgagcagccggaaccattggcttccagtaaggct
gtcatggagaaaattctatttcggagaagtttgcaactgcgcgatcagctacaggcgtgg
caggattctctagaaggcagaaaaatgctggaatttcggaaaagtttacctgcttataga
gagaaggatgcaatattgacaactgtttcacaaaatcaggtggttattatctcaggtgaa
acaggctgtggcaagaccacacaaattccccagttcatattagaatctgagatagaatct
ggccgaggagctgtttgtaatataatatgtactcagccaagacgaatatctgccatgtct
gtttctgaaagagttgcttcagaaaggggagagaaattaggcgaatgtgttggatataag
gttcggcttgaaggtataaaaggaagagatactcaccttctcttttgcaccacgggcatc
ttattgagaagattgctttgtgatagaaatttaaagggcataactcatgttattgtggat
gagattcacgaacgtggaatgaatgaggactttctgctcattgtccttaaagatctcctt
cctcgtagaccagaacttaggctgattctgatgagtgcgacccttgatgcagaacttttc
tcatcctactttgatggagctcctatacttcgcattccaggttttgcatacccagtgcaa
actcattttctggaaaatatcctggaaatgactggttacagattaaccttatacaatcaa
attgacgattatggccaagaaaagatgtggagaacaagtaaacaagctccaagaaagagg
aagagccaaattgcttctgctgtagaggatgcactaagagctgccgatttcaaggagtat
agtccccagactcgggaatctttgtcatgttggaatcctgattgcattgggttcaatctc
attgaataccttttgtgttatatatgtgaaaatgagaagcctggtgctgttctagttttt
atgactggctgggatgacataagctctctgaaggataagctctcgtctcatcctatttta
ggagatccaagccgagttttgttgcttgcttgccacggttctatggctagctcggagcag
aaattaatatttgatgatcccaaagaaggagtgaggaaaatagtgctagctaccaatatt
gctgagacaagtatcacaatcaatgatgttgtttttgtactcgattgtggaaaggcaaag
gagacctcgtatgatgcactgaataacactccttgtctgcttccttcctggatttctaag
gtttctgctcaacaaagaagaggaagggctggccgtgttcaaccaggacaatgttaccat
ctctatcctagatgcgtatatgaagcctttgcagagtatcaattgccagaaattttgagg
acaccattgcagtctctttgtctgcaaatcaagagtttgaaacttggaagtatctctgag
tttctctccagggctttgcagtcacctgaattcttggcggttcaaaatgccattgaatac
ttaaaaatcataggggccttggatgagaaggaaaatttgactgttctaggaaggtatttg
accgtgcttcccgtggagcctaaacttggcaagatgctcatattaggttctatcttcaat
tgcctggatccaatattaactattgtggctggccttagtgttagggatcctttcttgacg
ccgctggataagaaggatcttgcagaggctgctaaatctcaattttcccgtgactatagt
gaccatcttgcccttgtccaggcctatgagggctggaaagatgccgaaagagattttgca
gggtatgactattgctggaaaaattttatttcagtacaatctatgaaagctattgattct
cttcggaaagagttcttctccttgctcaaggatgctggactggttgatagcaacacaacc
acttacaactcatggagctatgaagagcgcctcatccgagcggttatttgctatggactc
tatccaggaattgcctctgtcgtgcataacgaaaagtcattctctctcaaaactatggag
gatgggcaagtgcttctatattctaactcggtgaatgctcgtgaatctaaaattccttat
ccatggctggttttcaatgagaagataaaggttaatgctgttttccttcgggattcaaca
gctgtttctgattcagtattgcttctgtttggtgggagcatttccaagggggacactgat
ggacatttgaagatgctgggaggatatttggaattcttcatgaaacctgatgtagctgaa
atttatcaaagtttgaggagagaactagacgagtttattcagaccaaacttctgaatccc
aggatggccatacatacatatcatgagcttctgtctgccatacgcttactggtctcagag
gatcaatgtgatggcaaatttgtatttggtcatcaagttctcaagccctcaaaggtatct
gttatggcaacgcaaccaaacttagtgtcaaggactgaaagtggacctggaggtgacaat
tctaagagtcagctacaaacattgctaaccagagcagggtatgctgcaccgttgtacaag
acgaaacagttaaagaacaaccaatttcgagctactgtggagttcaatggaatgcaaatt
atggggcagccatgcaacaacaagaagagtgcagagaaagatgcagcagctgaggccctg
cagtatctgatggctgggacccagacaggccaagaatacatcaatcacgtgtcaatgttg
ctaaagaaaagcaagaaggatcattactga
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integrated database retrieval system
