Jatropha curcas (Barbados nut): 105636961
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Entry
105636961 CDS
T03922
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3 isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
105636961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105636961
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
105636961
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
105636961
NCBI-ProteinID:
XP_012075760
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MRDRSPIARRTRNREDQRIQKLYEEMKKKNTPGFGRSCEKDDVSVNFGSKDDSVETIDLG
IYDTVEKSNAGTSSNVGTSCCESDEIGSDYDHISISDGDYDPISISDGEVEETGGEVKET
GGAVKETGGEVEIDSDGVICISDEVKETDISSNGEDTDDPEYENVEEEKSDTSGDVEGSS
SESKEEDTWVPGREIGKKGKGEIDGGGKVNCVAKRTRARGISESNKKRIKPGTIEQPVCV
DKEDVEDSNDSGDAAVNCDDSGDDVEIANDETYAPKDGNDDNEHVQELCGGQSTRKRIRA
YEDNEVFDILANSIFDKDELPCEEMVEQVIVEPTLPLKFTFGIEESAPVDISEEDKELEK
LWAEMGLALCANDGVDDAPVAKDEVDVAPDAELDPAVLCSQGKHFFILDEEIGIKCKFCS
LVNLEIRYYTAPFDRRPLQYSERRDYYEEQPNIFDKLCNQDSGHDSQAGCGSCNHMQGTV
WNIIPGIGKDLHAHQREGFEFLWKNIGGGIHLDKLKEPGSSDGETGCIISHAPGTGKTRL
AIVFLQTYMKFYPKCRPLIIAPCSMLLSWEAEFKKWKVDIPFHNLNQSKYSGKENPAAIK
LAKSVHNNLNYIRMVKLYSWKSERSVLGISYKLFEELVGEEKKRSKGKRKHEDDVVRKVL
LGLPGLLVLDEGHTARNEQSLIWQALSKVQTEKRIILSGTPFQNNFAELFNILILVRPKF
AVRISCNKRRKRRGRMQGARRDWASLTSSIGKVRDDAERLAEVRAIIGPMVHVHRGNILQ
QRLPGLVDSVVILKPVHLQEILLDKVQKAGGTNFNLEYLVSVVSVHPSLMREQSINIEEP
FAWDKLKRHRLNPEFGVKTRFLVELIRLSNAMHEKVLVFSQYLAPLKLIGKQLKYRFKWR
KDTEILHMHGRVDTDKRQSLIKNFNNRNSDSKVMLASTKACSEGINLVGASRVVLLDVVW
NPSVERQAISRAYRLGQEKVVHIYHLITSGTMEEEKYCRQAEKDRLSELVFHSSGTEHGL
KRNLSNMHEAQHDKLLDQMVGQENLKDIFKKIIYQPKESNLVDSFGLANL
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgagggaccgttcacctattgctagaaggactcgtaatagggaggatcagaggatccaa
aaattatatgaagagatgaagaaaaagaatacacctgggtttggtagatcatgtgaaaaa
gatgatgtaagtgtgaattttgggtctaaggatgatagtgtagagactatagatttgggt
atttacgatactgtagagaagagcaatgcgggtacttctagtaatgtgggtacgtcttgt
tgtgaatctgatgagataggtagtgattatgatcatatatctatttcagatggtgattat
gatcctatatctatttcagatggtgaagttgaagaaactggtggtgaagttaaagaaact
ggtggtgcagttaaagaaactggtggtgaagttgagatagatagtgatggagttatatgt
atttcagatgaagttaaagaaactgatatatcttctaatggagaggatactgatgaccca
gaatatgagaatgttgaagaagagaaatctgatacttctggtgatgttgagggttcaagt
agcgagagcaaagaagaggatacctgggttccagggagggaaattgggaaaaagggtaaa
ggagaaatcgatggtggtggaaaggttaattgtgttgcgaaacgtacacgggcaagaggt
atttcagaatccaataagaagagaattaagcctggaactattgaacaacctgtttgtgtt
gacaaggaggatgttgaggacagcaatgacagtggtgatgctgctgtcaattgtgatgac
agtggtgatgatgttgagattgcaaatgatgaaacttatgcacctaaagatgggaatgat
gataatgagcatgtgcaggagttgtgtggggggcagtccacaaggaagagaatccgtgcg
tatgaagataatgaagtttttgatattcttgcaaactccatatttgataaggatgaattg
ccttgtgaagaaatggttgagcaagtcattgttgagccgactcttccactaaaattcaca
tttggaattgaagaatcggcaccagtggatatatctgaagaagataaggaattagagaag
ctttgggctgagatgggccttgctctttgtgctaatgatggagttgatgatgcaccggtg
gccaaagatgaggttgatgttgcacctgatgctgaacttgatccagctgtcctttgcagt
caagggaagcatttctttatccttgatgaagagattggaatcaaatgcaaattttgctct
cttgtaaatctggagataagatattatacagcaccttttgatagacgtcctttgcagtat
tcagaaaggagggactattatgaagagcaacctaacatctttgacaagctttgcaatcag
gactccggtcatgattcacaggctggctgtgggtcctgcaatcatatgcagggcacagtg
tggaacatcattcccggtattggaaaggacctgcatgcacatcaacgtgaaggttttgaa
tttctatggaagaacataggtggtggaattcaccttgataagttgaaagagccaggcagc
tctgatggtgagactggatgtataatatcacatgctcctgggacagggaaaacccgtctg
gctatagtctttcttcagacatatatgaagttttatccaaagtgcagaccattaattatt
gccccttgcagcatgctgctttcctgggaagcagaattcaagaagtggaaagttgacatt
ccctttcacaatctgaaccagtccaagtactctggcaaggaaaatccggccgccataaag
ctagctaaatcagtgcacaataatttaaactatatccgcatggtgaagttatattcctgg
aaaagtgaaaggagtgtcctcggcatcagttataaactttttgaagaacttgttggagaa
gaaaagaagagaagtaaggggaaaaggaagcatgaagatgatgtggtgcgaaaagttctt
cttgggcttcccggtcttttagtcctcgatgaaggacatacggcccgaaatgaacagagt
cttatatggcaggctctatctaaagtccaaacagaaaagcgcattattctctcaggaaca
ccttttcagaataattttgctgagctttttaatatactaatcttggtgagacctaaattt
gctgttcggatatcatgcaacaaacgacgaaaaaggcgtggtcgaatgcagggtgcaaga
cgggattgggcttctctaacaagttcaattggcaaagttagagatgatgctgagcgattg
gcagaggttagagcaataattggacctatggtgcatgtacataggggtaacattctacag
cagagacttcctggtttggtagattctgtagttatcttgaagccagtccatttgcaggaa
atactccttgataaagttcaaaaagcagggggcacaaattttaatttggaatatttggtg
tctgtggtttctgtgcatccatctctgatgcgtgagcaatcaatcaacatcgaagagcct
tttgcatgggataaattgaaaagacatcggttgaatcctgagtttggagtcaaaacaaga
ttcctggttgagcttatccgtcttagtaatgcaatgcatgaaaaggttttggtgttcagt
cagtatctcgctcccttgaaattgatagggaagcaactcaaatatcgtttcaaatggagg
aaagatacggaaatattgcatatgcatggcagagttgatactgacaagcgccaatcattg
atcaagaatttcaacaacagaaacagtgattcaaaagtgatgcttgcatcgacaaaggct
tgttccgaaggaataaatcttgttggtgcttcaagggttgttttgctcgatgttgtatgg
aatccatcagttgaaaggcaagcaataagccgtgcatataggcttggacaggagaaagtt
gttcacatctatcatctgataacgtctggaacgatggaagaagaaaaatactgccggcag
gcagaaaaggaccggttatcagagttggttttccattcgtccggaactgagcatggtttg
aaacgaaatttatcaaatatgcatgaagctcagcatgataaactgttggaccagatggtt
gggcaagaaaatctaaaagacatattcaagaagataatctaccaaccaaaagagtcgaat
ttggttgattcatttggtttggccaatttgtag
DBGET
integrated database retrieval system
