Jatropha curcas (Barbados nut): 105637119
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Entry
105637119 CDS
T03922
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105637119
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105637119
03012 Translation factors [BR:
jcu03012
]
105637119
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105637119
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105637119
Translation factors [BR:
jcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105637119
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
T2SSE
ATPase
nSTAND3
AAA_19
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
105637119
NCBI-ProteinID:
XP_037494480
LinkDB
All DBs
Position
Unknown
AA seq
1154 aa
AA seq
DB search
MMRNCKLGGFLVGCANNYKLHSSSSNRHRTTFLALLLSFPNSSFFARPFSGYAAEQFSDD
DYECDFETHKASSSVANIDEWKWKLSLLLRNETDQEIVSRDRKDRRDFEQISNLAKRMGL
HSEMYGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEHCDRTRLTSPGA
GDAAGDAKSLDQVEDVTLDDNPDSFLDGSVMEKVFQRRSLRMRNMQRAWQESPEGKNLMD
FRKSLPVFKEKEKLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCSIICT
QPRRISAMAVADRVSTERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNL
NGITHVFVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSNYFGGAPRIH
IPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQRQLAPRKRKNQITALVED
ALNKSSFENYSSRARDSLACWMPDCIGFNLIEAVLCHICRKERPGGVLVFMTGWEDISCL
RDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFDRPPPNIRKIVLATNMAEASITINDV
VFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRKGRAGRVQPGECYHLYPKCVYEAF
AEYQLPELLRTPLNSLCLQIKSLQVGSIAEFLSAALQPPERLAVQNAIDFLKMIGALDEE
ENLTNLGKLAFFFFFFLSGNFLSMLPVDPKLGKMLIMGSIFRCFDPILTIVSGLSVRDPF
LLPQEKKDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQA
IHSLRKQFSFILRDAGLVDADAGNNNRLSHDQSLVRAIICSGLYPGITSVVHRETSMSFK
TMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNTVFIRDSTGVSDSILILFGGALSCG
GQAGHLKMLEGYIDFFMDPSLAECYLNLKEELDRLVQKKLQDPTVDIHKEGKYLLLAVQE
LVSGDQCEGRFVFGRESRRPKESSESRFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKT
NEFRALVEFKGMQFVGKPKKNKQLAERDAAIEALAWLTHTSDNHQDEHDNSPPDVTDNML
KLLGKRRRSKRCSG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgaaattgtaagttaggtggtttccttgtgggctgcgccaacaattacaagctt
cactcctcctcttcaaaccgccatcgcaccacttttcttgctttgcttttgtctttccca
aattcttcttttttcgcccgccctttctccggctacgctgccgagcagttttcagatgac
gactacgaatgcgatttcgagacccataaggcatcttcctctgtggccaatattgatgag
tggaaatggaagctcagcttgctattgcgcaatgaaactgaccaagaaattgtgtccaga
gatagaaaggataggagggactttgagcagatttccaacctagccaaaaggatgggcctt
cacagtgaaatgtatggaaaagtggtggttgcaagtaaagttcctcttcctaactataga
ccggatttggatgataagaggcctcaaagagaggtggtaatcccactaagcttacaaaga
agggtagagggtttacttcaggaacactgtgatagaactcggctaacttctccaggagct
ggtgatgctgcaggcgatgctaagtctcttgatcaggttgaagatgttactctagatgac
aatccagattcttttctagatggctctgttatggaaaaggttttccagaggaggagtttg
cggatgcgtaatatgcaaagagcttggcaggaatcaccagaaggcaagaacttgatggac
ttccggaagtctctacctgtattcaaggaaaaggaaaaactgcttcaagcaatagcaagg
aaccaggtcatagtagtatctggggagactggatgcggtaaaacaactcaacttcctcag
tacatattggagtcagaaatagaatctggtcgtggtgcattctgcagtataatttgcacg
cagcctcgaagaatatctgctatggctgttgcagatagggtgtctacagagagaggagag
cctcttggtgaaactgttggttacaaagttcggctagagggtatgaaaggaaaaaacacc
catctgcttttttgtaccagtggaattttactaagacggctgctaagtgacagaaacttg
aatggtataacccatgtttttgttgatgaaattcatgagcggggcatgaatgaagacttc
ctattgattgtgctcaaagaccttcttccacgtcgtccagacttaagattgattttaatg
agtgccactttgaatgcggaactattttccaactattttggcggagcaccaaggattcat
attccaggctttacatatccagtaagagcacatttcttagaagatgtactggaaatgact
ggatacaagttaacttcttttaatcaaattgatgattatggccaagagaaaatgtggaaa
acacagagacagcttgctcctcggaaaaggaaaaatcagatcactgctcttgttgaggat
gctcttaataaatcaagttttgagaattatagctctagggcacgtgattccctagcatgc
tggatgcctgattgcataggattcaaccttattgaggcagttctatgccatatatgtcga
aaggaacgtcctggtggtgtcttggtattcatgactggctgggaggatattagttgtttg
agggatcaacttaaagctcatcccctcctgggagatccaaatagggttttgcttttaaca
tgccatggttctatggcgacatctgaacagaaacttatatttgacagaccacctcctaat
atccgtaaaatagttcttgccactaatatggcagaagcaagtattacaatcaatgacgta
gtttttgtggttgattgtggaaaagcaaaggagactacttatgatgctttgaacaataca
ccttgtttgctgccatcatggatatcacaagcatctgcacggcagagaaaaggcagggct
ggccgtgtgcagccaggtgaatgttatcacctctaccccaaatgcgtttatgaagctttt
gctgaatatcaacttcctgaacttctgaggactcccttgaactctctttgcttgcaaata
aaaagcttgcaggtgggaagcattgcagaattcttgtcagctgcactccagccaccggaa
cgattagctgtccaaaatgccattgattttctgaagatgattggtgctctggatgaggag
gagaatctaactaatcttggtaagcttgctttttttttttttttttttttatcagggaac
tttttatcaatgcttccagtagatcccaagctagggaaaatgctaattatgggttctatc
tttcgttgctttgaccccatcttgacaattgtatctggccttagtgtcagggatcctttc
cttcttccacaagagaaaaaggatttagctgggacagcgaagtctagattttctgcaaaa
gactacagtgatcacatggctcttgtccgtgcatatgaaggttggaaagatgcagaacga
gaagggtcagcttatgagtattgctggagaaatttcctatctgcacaaactctacaagcc
atccattctctcaggaagcagtttagcttcattttaagagatgctgggttagtcgatgca
gatgcaggcaacaacaacagattaagtcacgaccagtccttggttcgtgcgatcatatgc
tctggcctctatcctggcataacatcagtagtgcacagagaaacatccatgtctttcaag
actatggatgatggccaagttctactatatgctaattctgtaaatgcacgttatcagaca
attccttacccatggctggtctttggtgaaaaagttaaggtcaatactgtttttatacgt
gattccactggcgtatctgattcgatactgatcctttttggtggtgctctcagttgtggt
gggcaggctggccatctgaaaatgttggaagggtatatcgatttctttatggatcctagt
ttggcagagtgctacttgaaccttaaggaagaattagacaggcttgttcaaaagaagcta
caagatcctaccgttgacattcataaggaaggaaaatacctccttcttgcagttcaagag
ctggtgtcaggagatcaatgtgaagggagattcgtctttggacgtgaaagcagaaggcca
aaggagtcgagtgaaagcagatttacaaaggatggaacaaatccaaagagcttgctacaa
actctgttgatgagagcagggcactcccctccaaaatacaaaacaaagcaccttaagacg
aatgagtttagggctctagttgaattcaaaggaatgcaatttgttgggaaacccaagaaa
aacaagcaacttgccgagagagatgctgctattgaggcgttggcctggttgactcacacc
agtgacaaccaccaagacgaacatgataactcacccccagatgttactgacaacatgttg
aaacttctaggaaagcgccgtaggtcgaagcgctgttctggttga
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integrated database retrieval system
