KEGG   Jatropha curcas (Barbados nut): 105637554
Entry
105637554         CDS       T03922                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerases IV and V subunit 2
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    105637554
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:jcu03021]
    105637554
Enzymes [BR:jcu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     105637554
Transcription machinery [BR:jcu03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     105637554
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5
Other DBs
NCBI-GeneID: 105637554
NCBI-ProteinID: XP_012076429
UniProt: A0A067KMJ5
LinkDB
Position
Unknown
AA seq 1173 aa
MGESVDAMEEDIGTSNKGEKLSNGFDMDIDMNNDDDDDDYDSDDDVDFMELNTSLSEMGE
PYLKDFCKRAATLFFNEYGLISHQINSYNDFIGNGLQKAFDSFGELVVEPGYDPSKKGEN
EWRYASVRFGKVTLDKPSFWGGSDGTDHNMLPRHARLQNMTYSSRMKVNVTVEVYTQKVI
RSDKFKTGKDQFVDKVVLSTDNRDIIIGRIPVMVKSDLCWMKTAERSDCDFDHGGYFLIK
GAEKVFIAQEQVCLKRLWISNIQSWTVSYKSEIKRNRLIVRLVDLSKVEDIKGEKKGLNV
YFLSXFASIHDADEKCEGFRNDREALGYVIKQIQGTRFPPGETEDCISLYLFPSLHSPRQ
KARFLGYMVKCLLQAYSGQRKCDNRDSFRNKRFELAGELLDRELKVHIAHARRRMAKALQ
KDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPFKRMERISGVVANLGRTNPLQTM
VDLRKTRQQVQYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAITGLVSTEILEP
LIDILFDCGMDKLVDDTHTKLDEKYKVFLNGEWVGVCEDSNLFVAELRRLRRRKKLPRQV
EIKRDEQQKEVRIFADAGRILRPLLVVENLHKIKAFKGGNYTFQSLLDKGIIEFIGTEEE
EDCSTAWGIKFLVAGVDKKQPLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKH
SQQAIGFPTTNPNIRVDTLSHQLHYPQRPLFRTVTADCLGKPGYARGHHGMLPKPELFNG
QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKFEDTVN
FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGRFAESGADHSIKLKHTERGMVQKVVL
SSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKDGVVPDIVINP
HAFPSRQTPGQLLEAALGKGIACGGPMRYATPFSTLSVEAITDQLHRAGFSRWGNEKVCN
GRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME
RDCLIAHGASANLHERLFTLSDSSQMHICQNCKNVANVIERTVPPSRKIRAPYCRICESA
DDIVKVNVPYGAKLLCQELFSMGISLKFETQLC
NT seq 3522 nt   +upstreamnt  +downstreamnt
atgggggagtcagtggatgctatggaagaagacataggaactagtaacaagggcgagaag
ctctcgaatgggtttgatatggatatagatatgaataatgatgatgatgacgatgattat
gattccgatgatgatgttgattttatggaattaaacactagcttaagcgaaatgggtgaa
ccatacttgaaagatttctgtaaaagggctgcaactttattttttaacgagtatggtctt
attagccaccagatcaactcctacaatgacttcatcggcaatggtttgcagaaagccttt
gattccttcggtgagttagttgttgagcctggatatgatccatccaagaagggagagaat
gaatggagatatgcttcagttaggtttgggaaggttactctcgataaaccgagtttttgg
ggtggttcagatggtaccgatcataatatgctacctaggcatgccagacttcaaaatatg
acatattcatccaggatgaaagtgaatgttactgttgaggtgtacactcagaaagtcatt
agaagtgacaagttcaaaactgggaaagatcagtttgttgacaaggtggttctgagtact
gataacagggatattataattgggaggatacctgtgatggtgaagtctgatctttgctgg
atgaagacagctgaaagatctgattgtgactttgatcatggtggttactttttgatcaag
ggagcagagaaggttttcatagcacaagagcaagtttgtttgaagagactatggatttca
aatattcagagctggacagtttcctataagagtgaaattaagaggaatagattaattgtt
agactagtagatctttctaaagttgaggacattaaaggagaaaagaaaggcctcaatgtg
tattttttgtcannctttgcctcaattcatgatgctgatgagaagtgtgaggggtttcgc
aatgatagggaagctcttgggtatgtgattaaacaaatacaaggaactcgatttccgcca
ggggaaactgaagactgtattagcctatatctgtttcccagtctgcatagccctaggcaa
aaggctcgctttctgggttacatggtaaagtgtcttttgcaggcatacagtggccaaaga
aaatgtgataatcgggatagtttcaggaacaagagatttgagttggccggtgagttgctt
gatcgagagctaaaagtacacattgcacatgcacggaggcggatggccaaggctctgcaa
aaagacctctatggagatcgtgatgtgcgcccaattgagcattatctggatgcttctata
gtcacaaatggtctatcgagagcattctcaactggggcatggtcacatccatttaagagg
atggaaagaatatctggtgttgtggcaaatctggggcgtacaaatccattgcaaacgatg
gttgatttgcgaaaaacacgacagcaggttcagtacacagggaaggttggagatgctaga
tacccgcacccttctcactggggtagggtttgctttctttctactccagatggggaaaac
tgtggacttgtaaagaatttggccattactggacttgttagtacagagatattggaacct
ctgattgacatattgtttgattgtggaatggacaaactggttgatgatacccatactaaa
ctggatgagaagtataaagtattcctgaatggagaatgggttggagtctgtgaagattct
aatttgtttgtagctgagcttagacgtttgcggcggaggaagaaattacctcgacaggtg
gaaatcaaaagagatgaacagcaaaaggaagtacggatatttgctgatgctggaaggatt
ttacgtccccttttagttgttgagaatttacataaaataaaagcatttaaagggggaaat
tacacctttcaatctcttctggacaagggaattattgagttcattggaactgaagaggaa
gaggactgcagcactgcatggggcatcaaatttcttgtagcaggagttgataaaaaacaa
cctttgaagtacacacactgtgaacttgatatgtcctttttattaggtttgagttgtgga
atcattccctttgccaatcatgaccatgcaagaagggtcctataccaggctcaaaaacat
tctcagcaggctattggctttcccacaacaaatcccaacatcagagtggacactttgtct
caccaattgcactatccccaaaggccactttttcggactgtgactgcagattgtcttgga
aaacctggatatgcacgaggccatcatggaatgctgccgaagccagaattgtttaatggt
cagaatgctattgtagcagtcaatgttcatctaggatacaaccaagaggactccttggta
atgaatcgtgcctctttagagcggggtatgtttcgatctgaacatatcagaagttataag
gctgatgttgataataaggaactattagacaaaaggcgaaagtttgaagatactgtaaat
tttgggaagatacagagtaaaattggacgtgttgacagccttgatgatgatggttttcct
ttcattggtgcaaatttacaaagtggtgatatcgttattgggaggtttgcagaatctggg
gcagatcatagtataaaattgaagcacactgaaaggggtatggttcagaaagtcgtgtta
tcttctaatgatgagggaaaaaattttgctgtggtgtctctgagacaggttcgttctcca
tgtcttggagacaaattctcaagcatgcatggacaaaagggtgttctaggttttttggag
tcccaagagaacttccccttcacaaaagacggagtagttcctgatattgttataaatcca
catgcatttccttcacgacaaactcctggtcaactcttagaggctgctttaggaaagggg
attgcctgtggtggtccaatgagatatgccacccctttctccacactgtctgttgaagcc
ataacagaccagcttcacagagctggattttcaagatggggaaatgagaaagtttgcaat
ggtcgaactggtgaaatggttcgctctcttatatttatgggaccaacattctatcagcgg
ttgatccacatggctgaagataaagtaaaatttcgcaacactgggcctgtccacccactt
accagacagcctgttgcagaccgtaagcgttttggtggtatcaagtttggtgagatggag
cgtgactgcctcatagctcatggtgcatctgcaaacctgcacgagcgactttttactctc
agtgattcttcacagatgcatatttgccagaactgcaaaaatgtggccaatgtgattgaa
cggacagtgccaccaagccgcaagattagggccccctattgccggatttgtgaatctgct
gatgatattgtgaaggttaatgtaccttatggcgccaaattgttatgccaggagcttttc
agcatgggtataagtctgaagtttgaaactcagctttgctga

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