Jatropha curcas (Barbados nut): 105637857
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Entry
105637857 CDS
T03922
Name
(RefSeq) probable RNA-dependent RNA polymerase 5 isoform X5
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
jcu
Jatropha curcas (Barbados nut)
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
jcu03036
]
105637857
Enzymes [BR:
jcu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
105637857
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
105637857
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RdRP
MADF_DNA_bdg
Motif
Other DBs
NCBI-GeneID:
105637857
NCBI-ProteinID:
XP_012076891
LinkDB
All DBs
Position
Unknown
AA seq
1008 aa
AA seq
DB search
MADTFSVQLPPSVEQLIAEICTKQQQPRLGNQARRELASIGEDEALEILRTISSTEIKKT
FDGFVFYLVKKWATNNGSPGKRLCLSPQSPQQSSRSPTTTRLMMPARLHLESRFSSASSS
AAVISPQLEALGELEFRKAFLILSYMGGYKLENVISAEKIRGIKDLPMDKFEIEVWNSIG
FKCGYVKDNERPRYFVWDCGITHIYHCHVYADGTYRFKGPHLTTLSNFLQRALGDDNVLM
VKFAEEETEERSSASSSVHYYANYKKLAIEGVLVGLRRYRFFVFKDGGKEAKKKDPTTSP
VKCFFVRTESNASSDSPDYILHGKTIGEARSMFMNVNKLLPSLSKYMARLSLVLSKTLKL
DVDLSGVNIEKIDDIQCRDNNGNVLEDKDGKPRIHTDGTGFISEDLASKCPKNVFKGKSN
NASNIEGLLDCIESRKLPETKIPEPRNGELPLLIQFRMFNNGGAYKGTFLVNKKLPSGTI
QVRPSMTKVDPDAEPKACSQNSLEIVSTSNRPKRAYLSRYLIPLLRAGGVPEEFFMDLLK
NALEDTQGALTKKHAALRVTIVNGEMDDYTLAKMLLSGIPLEEPFVQHHLRILMKEEKKN
LRGGRIPIPESYYLMGTADPTGRLESDEVCVILDNGQISGKVLVYRNPGLHFGDVHILNA
TYVKDLEDFVGNAKYGIFFPCRGPRSLADEMAGGDFDGDTYFVSRNPELLEKFKQSQPFI
PLSSTDDMPNKQPCKFSEMELEDELFKLFLTARFQPNHAAGVAADSWSALMDRYLTLEDD
RSDERDHMKRNMVELIDKYYDALDAPKKGGKKIFIPEELKAELFPHHMEREKEISYTSTS
ILGLIYDKVKSFEEADPPEIEVWKLPSFNDRVSEPCLEKWKTLHNQYRQEMTIALKNKET
KDKTAKEVYKKYKEILYEAAEFEESKRKEDDIFEEALAIYEVCYNHAITKQAEKRPGAAA
EKKPPAGYCGFAWKVAGQALCKLYSRKQANCEKTMMIYTTPSALKELL
NT seq
3027 nt
NT seq
+upstream
nt +downstream
nt
atggccgatactttttcagtgcagctgcctccttctgtggagcaacttattgctgaaatc
tgcacgaagcagcaacaaccgcgtcttggaaatcaagcgcggcgggagctagcttcaatt
ggagaagacgaggctctggaaatactccgtacgatttcttccaccgagattaaaaaaact
ttcgacggctttgttttttatttggttaaaaagtgggcaaccaataatggttctcctggt
aaacgcctttgtttgtccccacagtcgccgcagcagtcgagtcgcagtcccacaactact
cgactaatgatgcccgctcgtttgcatttggaaagtagattcagttctgcgagttcgagt
gcagcggtaattagcccacagttggaggccttgggcgagctcgaatttagaaaagcattt
cttatattaagttatatgggcggttataaactggagaatgtgatatctgcggagaagatt
cgtgggataaaagatttgccgatggacaaatttgaaattgaagtttggaactccataggc
tttaaatgtggctatgtcaaagacaacgaacgcccgaggtattttgtttgggattgcggc
ataacgcacatataccactgccatgtttatgcagatggaacttacaggttcaagggtccc
catcttaccacattgagcaatttccttcaaagggcattaggagatgataatgtcttgatg
gtcaagtttgcagaagaggaaactgaagagagaagttcagcaagtagctcggttcattac
tatgctaattacaagaaattagctatagaaggggttcttgttggtttgcgtcgttaccgc
tttttcgtgttcaaggatggaggcaaagaagcaaagaagaaagatccaactacttcacct
gtgaagtgcttttttgttcggacagagtctaatgcatctagcgacagtccagattatatt
ttacatgggaaaacaattggagaagctagatctatgttcatgaatgtaaacaaattgctg
cccagtttgtccaaatatatggctagactaagtctcgttttgtcaaagacgctgaagcta
gatgttgatttatcaggcgtaaatattgaaaaaattgatgatatacagtgccgggataat
aatggtaatgttcttgaagataaagatggaaaacctcgcatccatactgatgggactggg
tttatatcagaggacttggctagtaaatgcccaaagaatgtattcaaaggcaaatccaat
aatgctagcaacatagaggggttacttgattgcattgaatccaggaaacttccagaaaca
aaaattccagaacctcgtaatggagaattgcccttgcttattcagtttcgcatgttcaac
aatggtggtgcttacaaaggaactttccttgttaataagaagcttccctctggaaccatc
caagttcgaccttcaatgaccaaagttgatcctgatgcagagcccaaagcttgctcccag
aattcactggagattgtttcaacaagcaatcggccaaagagagcatatctgtcgaggtat
ctaattccacttcttcgcgctggtggggttccagaagagttttttatggatttgttgaag
aatgctttggaagacacacaaggtgccctcacaaagaagcatgcagccttacgagtgacc
attgtcaacggtgagatggatgattacactttggcaaaaatgcttctttcggggattcct
ttggaagaaccatttgtccaacatcacctgcgcatattgatgaaggaagagaagaaaaac
cttagagggggacgtatacccatccctgaatcatattatttaatgggaacagctgatccc
actgggcgtctagagagtgatgaagtttgcgtaatattagataatggtcagatttcgggg
aaagtgttagtgtatcgaaatcctggtctgcattttggagatgtacatattctaaatgca
acatatgtgaaggatttggaagattttgtaggaaatgcaaagtatggtatattcttccct
tgtagaggacctcggtcattagcagatgagatggcaggaggtgactttgatggtgacaca
tactttgtatcaagaaatcctgagctgttggagaaattcaaacaaagtcaacctttcata
cccctgtcttcaactgatgatatgcctaacaagcaaccatgtaaattttctgagatggag
ctggaggatgagctattcaaattatttttgacagctagattccagccaaaccatgctgcg
ggtgtggcagctgatagttggtcagcattaatggataggtatctaacattggaagatgat
agaagtgatgaaagagaccacatgaagaggaatatggttgagttaattgataaatattat
gatgctctagatgcaccaaagaaaggtggaaaaaagatttttatcccagaagaattgaag
gcagagttgttcccacatcatatggaaagggaaaaagagatttcttacacatctacatca
attctgggattaatttatgacaaggtcaaatcatttgaagaagcagatccaccagaaatt
gaagtttggaaactcccttctttcaacgacagagtctcagagccatgcctggagaaatgg
aagacgcttcataatcagtacaggcaagagatgacaattgctctaaagaacaaagagacc
aaagataagactgctaaggaagtctacaaaaaatataaggagatattatatgaagctgca
gaatttgaggagagcaagaggaaggaggatgacatatttgaagaggctcttgctatttat
gaggtttgttataaccatgccataaccaaacaagctgaaaaaaggcctggagctgctgcg
gaaaaaaagcctcctgctggctattgtgggttcgcttggaaggtagcagggcaggccctt
tgcaaactgtactcaaggaaacaggccaactgtgaaaagacaatgatgatatacacgacg
ccgtctgctctgaaggagttattatag
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