Jatropha curcas (Barbados nut): 105637920
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Entry
105637920 CDS
T03922
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105637920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105637920
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105637920
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
105637920
NCBI-ProteinID:
XP_012076986
LinkDB
All DBs
Position
Unknown
AA seq
212 aa
AA seq
DB search
MGDQMVLDNGHEGSRDQGSVLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGL
RTYVEAVILVELFKHPHLLLLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNEDET
DWEVDECLGMWWKPDFETLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIP
LCQIHENHKTYGSIISGIPQLLSKFSFNIINS
NT seq
639 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatcaaatggttttagacaacggccatgaaggtagcagggatcaaggttctgtt
ttagacatataccctctcagtagctactattttggtgcgaaagaccctctttctttcaag
aacgagactttggcagaccgtgtacaaaggatgaaatctaattaccttgcccatggattg
aggacatatgtggaggcagttattctggttgagttgttcaaacatcctcatcttttgcta
ttgcaaataaggaattccatctttaggcttcctggtggtcgtttaagacctggagaatca
gatattgatggattgaaacgtaagctatcaagaaagctctccggaaatgaggatgaaact
gattgggaggtggatgaatgccttgggatgtggtggaagcccgactttgaaactttacca
tatccatacatgccacctaatgtaaaaacacccaaggaatgcacgaaactcttccttgta
aggttaccaatgagccgaaagttcattgtaccgaaaaaccttaagctgctggcaatccca
ttgtgccagattcatgaaaatcacaagacatatggatcaatcatttcaggaataccacag
ctgctatctaaattctccttcaacattatcaattcttaa
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