Jatropha curcas (Barbados nut): 105638064
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Entry
105638064 CDS
T03922
Name
(RefSeq) endoribonuclease Dicer homolog 3a isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
jcu
Jatropha curcas (Barbados nut)
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
jcu03036
]
105638064
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
105638064
microRNA pathway
RISC loading complex
105638064
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
DEAD
ResIII
Helicase_C
PAZ
SWI2_SNF2
SNF2-rel_dom
AAA_22
DND1_DSRM
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
105638064
NCBI-ProteinID:
XP_012077173
LinkDB
All DBs
Position
Unknown
AA seq
1663 aa
AA seq
DB search
MADLTPLKRSYSDMSNGSTEYLNLGSDVRDGQDNAGQGLASTVNPIDFHPRSYQLKVFEV
AMKRNTIAVLETGAGKTMIAVMLIKEIGQSIKSGVHKKKIIFLAPTVHLVNQQYEVIQMH
TNFDVGEYYGAKGVDEWTQKFWGKEIDEHDVLVMTPQILLDALRKAFLNPEMICLLIIDE
CHRATGNHPYTKIMKEFYHKLNDKPKIFGMTASPVVRKGVSSAMDCEDQISELESILDSQ
IYTIEDRTEMDVHIPSAREICRFYDKVQLYGSDLKSKIEALWTKFDASMLSLQESAQNCY
KDVDDKLKTLRQRLSNDHTKILNCLEDLGLICAYEAVKVCLQNAPSSTEECEIYREISLK
CKCFLEEVLSVISESLPYDDDSFFNLGFDYLEAVSLGYISPKLYELLQVFLSFGGGRKIL
CLIFVDRILTAKVIERFVKKVAALAHFTVSYVTGTNASVDALTPKMQKETLDSFRFGKVN
LLFSTDVLREGIHVPNCSFVICFDLPKTVCCYVQSRGRARQDDSQYIIMLERGNVKQRNQ
LFDFIRSEWLVTNTAMNRDPDVWTLKACMAEETEAYIVEGTGASVTADSSVSLIHRYCAK
LPGDKYYTPMPIFEFKFSEKSCQCNLKLPASAAFQTIVGPKCRSQQLAKKLVCLEACKML
HQMRALDDHLLPLVDEPTEGDHIMASKETSAGPGTTKRKELHGATNIHALSGSWAEKLDR
VTFHAYKFDFSCSIATEIYSGFVLLLESKLDDDVGNIELDLYLLRKMVRASVASCGQIQL
DAEQMTKAKRFHELFFNALFGKLFTVSKSSETPREFLLQKETSILWIPSNMYLLLPLKTL
SASSDESWKINWKGVNACTYAVEFLKNSLLGAKHCKDARGSSLSGVGSFVTECSGTNEIH
LADILVDGDKLKDMVVFAIHTGKIYSVVKVVIDTSAESPFEKNAKGKPAKYSSFAEYFNR
KYGIVLKYPGQPLLLLKQSHKPHNLLLNPDDEVGASKDGLDVEKQRQYAHMPPELLVSID
IPVQTLKSFYLLPSVMNRLESLMLASQLRQEIGCHSPDFHIQSSLMLEAITSLRCNEAFS
MERLELLGDSVLKYAVSFNLFLRHPTKHEGQLTAHRKKIICNAALHKFGISRKLQEYIRD
SEFNPRCWVAPGQRPIYYIRCECGIDTLEVPLDAKFQTEEKVFIGKCCSIGHRWMCSKTI
SDCVEAIIGAYYVSGGLMSAIHVMKWLGMGVDLDLSLVDEAIKNASLRSYIPKEQDLENL
ESKLGYTFFFKFLLQEAITHATMQEQGIGYCYQRLEFLGDSVLDLLITWHLYQTHPKIDP
GELTDLRSACVNNENFAQVVVRQGLHEHLQHCSASLLSKITEYLQSFHESDEATKLSPGL
KGPKALGDLLESIAGAILIDTRLKLDEVWRIFEPLLSPIATPESLELPPLRELIELCDFH
GYFIKEKCINEKDIVHAELRIQLNDVLLTGDGYDRSRKCAKGKAASSLLKELEKRGITYL
RGDAKRRKQAEETRNKISSADTTNKYTSEPTNQQNKLENKLPAGSGVPSLANSPHVIKSI
DTNKGGPRKSLFELCKKADWTKPKFSTTEYKTSTSKICDDGSKRTENRINFIAKITLHIP
SLGDIECEGDAQLDKKSSCDSAALALLYQLQEQGHIIINCDQE
NT seq
4992 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccttactcctctcaagagaagctacagtgatatgagtaatggctcgacagaa
tatcttaatttgggttcggacgttcgtgacggtcaagataatgctggtcaaggactagct
tctactgttaatcctattgattttcaccccagaagttaccaactgaaggtttttgaggtg
gctatgaagaggaacactatagcagtgttggagacgggtgctggaaagacaatgatagca
gtaatgttaattaaagaaattggccaatctatcaagtccggtgttcataaaaaaaagatt
atttttttagctcctaccgttcatcttgtcaatcagcaatatgaggttattcaaatgcat
acaaattttgatgtgggagagtactatggagctaaaggggttgatgagtggactcagaag
ttctggggaaaggagattgatgagcatgatgtattggttatgactcctcagatccttttg
gatgccttaagaaaggcattcttgaatccagaaatgatatgtttgcttataattgatgag
tgtcatcgtgccacgggtaatcacccttatacaaaaataatgaaggaattctatcacaaa
ttgaatgacaagccaaagatctttggaatgacggcatcgcctgttgttagaaaaggtgtc
tcttctgctatggattgtgaggatcaaatatcagagctcgaaagcatattggattctcag
atttatactattgaagacaggacagaaatggatgtccacattccctctgcaagagaaatt
tgtagattttatgacaaagtacagctttatggttcagatttgaaatcaaagattgaagct
ttatggaccaagtttgatgcttcgatgctcagtttgcaagagtcagcacaaaactgttac
aaagatgtggatgataaacttaaaacactgagacaacggctttccaatgaccacacaaaa
atattgaattgccttgaagatctgggccttatatgtgcgtatgaggctgtcaaagtttgt
ttacaaaatgcccccagttccactgaagaatgtgagatttatagagaaatttctctgaag
tgcaaatgtttccttgaggaagtgttgagcgtaattagcgagtctttgccatatgatgat
gattcttttttcaatctggggtttgactacttagaggcagtaagtttgggttacatatca
ccaaagttatatgaacttcttcaagttttcctatcatttggcggaggtaggaaaatatta
tgcctcatttttgttgatagaattcttaccgctaaagtaattgaaagatttgtgaagaaa
gttgcagcactggcacattttacagtttcatatgttactggaactaatgcgtcagtcgac
gcattgacacctaaaatgcaaaaggaaaccttggactcatttcgctttgggaaggtaaat
ctattattttccactgatgtgttgagggagggaattcatgtgccaaactgctcctttgtt
atatgttttgatttgcccaagacagtttgctgttatgtccaatctcgaggaagagctcga
caagatgattcccaatatatcatcatgcttgagaggggaaatgtgaaacaaaggaatcaa
ctatttgatttcataagaagtgaatggttagtaactaatacggctatgaatagagatcct
gatgtatggactcttaaagcatgtatggctgaggaaaccgaggcatatattgtggaaggt
actggagcttcagttactgcagactctagtgttagcctcatacatcgatactgtgcaaag
ctccctggagataagtactacacaccaatgccgatttttgagttcaaattttctgaaaag
tcatgccagtgtaacctaaagttacctgccagtgcagcttttcagacaatagttggtcca
aaatgtaggagtcaacaattagcaaagaagcttgtatgcttggaggcttgtaagatgctg
catcaaatgagagccttggacgaccatctcctaccattagtggacgagcctactgaaggt
gatcatataatggcaagcaaagaaacatcagcaggtcctggaactacaaaaaggaaggaa
ttgcatggagcaaccaatattcatgcattatctggaagctgggcggagaagcttgataga
gtcacatttcatgcatacaagtttgacttctcctgtagtattgccactgagatttattct
ggatttgttcttctccttgagtcgaagcttgacgatgatgttggaaacattgagttggac
ctttatttgctcaggaagatggttagagcttctgttgcttcatgtggacaaatacaatta
gatgctgaacagatgacgaaagcaaaacgctttcatgaattatttttcaatgcattattt
gggaagttgtttactgtgtccaaatcatccgaaacaccaagagagtttctacttcaaaag
gaaacaagtatactttggatcccatcaaacatgtatttgctgctaccactcaagacactc
agtgcttcaagtgatgaatcttggaaaataaattggaagggggttaatgcttgcacttat
gctgtagaatttttgaagaactcacttttgggtgctaagcactgtaaagatgccagggga
agttcactttctggggttggctcatttgtgacggagtgcagtggcacaaatgaaatccac
ttggctgatattttggttgatggagataaactgaaagatatggtggtatttgcaattcac
actggaaaaatatactctgttgttaaagtggtgattgacacatctgctgagagtcctttt
gagaaaaatgctaagggtaagccagcaaagtattcttcctttgccgagtacttcaaccga
aagtacgggattgtgctgaagtatccaggacagcctttgctgctgttaaagcaaagccat
aagccccataatctacttcttaatcctgatgatgaagtaggcgcctcaaaagatggcctg
gatgttgaaaaacaacgacaatatgctcatatgccaccagagcttttagtcagtattgat
attccagtccagactctaaaatcattttacttacttccatctgtgatgaaccgtctagag
tctctgatgttagccagtcaacttagacaagagattggctgccattctcccgacttccat
atccaaagctccctgatgctggaagcaataacatctcttagatgtaatgaagcattttcc
atggagcgtttggaattgcttggggattctgttttaaagtatgctgttagttttaacctc
tttttaaggcatcccacaaaacatgagggccaattgactgctcaccgcaaaaagatcatt
tgtaatgcagccctgcataaatttggaataagtcgcaaattgcaggaatatatacgagac
agcgaattcaatcctcgttgttgggttgctccaggacaaagacctatttattacattcgt
tgtgaatgtgggattgatactttagaagtccctttagatgccaagtttcaaactgaagaa
aaagtttttattggaaaatgctgttctataggccatcgatggatgtgttcgaaaaccata
tctgattgtgttgaagcaatcataggagcatactatgttagtggaggactgatgtctgca
attcatgtaatgaagtggcttggcatgggtgttgacttagatctttcgctggtagatgaa
gccattaaaaatgcttctctgcgatcttatatcccaaaagaacaagatttggaaaaccta
gagtcaaaacttggttatacatttttcttcaagtttctattacaagaggccattacacat
gcaaccatgcaagaacagggaattggctactgttatcagaggcttgaatttctgggtgac
tctgtgctggacttgctcattacgtggcatctctatcaaactcacccgaaaattgatcca
ggtgagttgacggacttgcgttcagcttgtgttaataatgaaaactttgctcaagttgtt
gtgagacaaggcctacatgagcaccttcaacattgttctgcatcacttctaagcaaaata
acagaatatctgcagtcttttcatgaatctgatgaagccaccaaattgtctccaggtctc
aagggtcccaaggctcttggggacctgcttgaaagtattgccggggcaattttaattgat
acaaggcttaagctcgatgaagtctggagaatatttgagcctctgttgtccccgattgca
acacctgaaagccttgagctgcctcctctgcgtgaactaattgaattatgtgacttccat
gggtactttataaaagaaaaatgtatcaatgagaaggacattgtgcatgctgagctcagg
atacagctaaatgacgttcttttgactggagatgggtatgatcgcagcagaaaatgtgca
aaagggaaagcagcttcttctttgttgaaggaacttgagaaaaggggaataacatacctc
cgaggtgatgcaaagaggaggaaacaagctgaagaaactagaaataaaatatcttctgca
gacacaacaaacaaatacacaagtgagccaacaaaccagcagaataaactggaaaataaa
ttgccagcagggagcggagttccttcccttgccaacagtccccatgttatcaagtcgatt
gacacaaataaaggaggacctcgaaagagtctttttgaactctgtaaaaaagcggattgg
acaaagcctaaatttagtacaacagaatataagacaagcacttcaaaaatatgtgatgat
ggcagcaaaagaacagagaatcgtatcaatttcatagcaaaaatcaccttgcacataccc
tctcttggggacattgagtgtgaaggggatgctcaacttgataagaagagttcatgcgat
tcagctgcactggctctactttatcaacttcaggagcagggacacatcatcatcaactgc
gaccaggaatga
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