Jatropha curcas (Barbados nut): 105638413
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Entry
105638413 CDS
T03922
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
jcu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105638413
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
105638413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105638413
04121 Ubiquitin system [BR:
jcu04121
]
105638413
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105638413
Enzymes [BR:
jcu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
105638413
Spliceosome [BR:
jcu03041
]
Complex B
Other components
Prp19 complex
105638413
Complex C
Prp19-CDC5 complex
105638413
Ubiquitin system [BR:
jcu04121
]
Ubiquitin ligases (E3)
U-box type E3
105638413
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
105638413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_DCAF12
Beta-prop_RIG_2nd
PROPPIN
WD40_like
Beta-prop_DCAF4
U-box
PAS_11
zf-Nse
B-prop_COPA_B_2nd
KNTC1_N
Beta-prop_NWD2_C
WDR54
V_ATPase_I_N
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
105638413
NCBI-ProteinID:
XP_012077597
UniProt:
A0A067KEA4
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MHCSISGEVPEEPVVSKKSGLLYEKRLIEMHISDYGKCPITGEPLTMDDIVPVKTGKIVK
PRTVQTASIPGMLGMFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDAACRVIARLRK
ERDEARSLLAQAERQIPALATAAAPVNTSALSNGKRAAEEDDLGPAGKRMRPGISPTIIT
ELTDCNAALSQQRKKRQIPPTLAPVEAVERYTQLSSHPLHKTSKPGISSIDIHYSKDIIA
TGGIDSTAVLFDRPSGQIVSTLSGHSKKVTSVKFVAEGDLFLTGSADKTVRVWQGSEDGN
YECRHILKDHTAEVQAVTVHATNRYFVTASLDNTWCFYDLSSGLCLKQVDDTSKSDTSKP
EGYTSAAFHPDGLILGTGTSEAVVKIWDVKSQANVARFDGHEGAVTAISFSENGYFLATA
ARDSVKLWDLRKLKNFRTLNLYDSDTPTNSVEFDHSGCYLGVAGSDIRIYQVASVKADWN
CIKTLPDLSGTGKATCVKFGPDAKYIAVGSMDRNLRIFGLPGDEGQPES
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcattgttcaatctccggcgaggtgccggaagagcccgtcgtctcaaagaagtctggg
cttctatacgaaaagcgcttaatcgagatgcacatatcggattatggaaaatgtccaatt
actggggaaccacttacgatggatgacattgttccagtcaaaacaggcaagattgtgaag
ccaagaactgtacaaactgctagcatccctgggatgcttggaatgttccagaatgaatgg
gacggtctgatgctatccaattttgctttggagcaacaactacatactgcaagacaagag
ctaagccatgcattataccagcacgatgctgcttgccgagtgattgctagacttagaaag
gaaagggatgaggcaaggtcactgcttgcacaggctgagagacagatacctgcgttagca
acagctgctgctccagtcaatacctctgctctcagtaatggaaaaagagctgccgaagag
gatgatttgggcccagctggaaagagaatgcgtcctggaatttctcccaccatcattacg
gagttgacagactgtaatgcagctctttcacaacagcgtaaaaagcggcagattcctcca
acattggctcccgttgaagctgtggagaggtacacacagctttccagtcatccccttcac
aaaaccagcaaaccgggcatttcatctattgatatccattattctaaggacatcattgcc
actggaggaattgattccactgcagtactctttgatcgcccatcaggacagatcgtatct
acactcagtggtcactcaaagaaggttactagtgtgaaattcgtagccgagggtgattta
tttttgactggatctgcagacaagactgttcgtgtttggcaaggatctgaagatggaaac
tatgaatgcagacacattttgaaggatcacactgctgaggtgcaagctgtcacagtacat
gccacaaataggtattttgtgactgcttctctcgataatacatggtgcttctacgatctc
tcctctggcttatgtttgaagcaggttgatgacacgtcaaaatctgacacttctaaacct
gagggctatacatctgcagcttttcatcctgatggtctcatccttggaacaggcacctca
gaagcagtcgttaaaatttgggatgtaaagagccaggcaaatgttgcaagatttgatggc
catgaaggagcagtaactgccatatctttctcagaaaatggttacttcctagcgacggca
gctcgtgatagtgttaaattatgggatctgcgcaaattgaagaactttcgcacgctcaat
ctgtatgattcagatacaccaacaaactcagtggaatttgaccacagtggatgttacctc
ggagttgcaggctcagatataagaatttaccaagttgctagtgttaaggcagattggaat
tgcatcaaaactctccctgacttatctggcacaggaaaagcaacttgtgtgaaatttggt
cctgatgctaaatacatagcagtaggatctatggaccgcaacctccggatatttggccta
cctggggatgaaggtcaaccagagtcatga
DBGET
integrated database retrieval system
