Jatropha curcas (Barbados nut): 105638604
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Entry
105638604 CDS
T03922
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
105638604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105638604
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
105638604
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
105638604
NCBI-ProteinID:
XP_012077823
LinkDB
All DBs
Position
Unknown
AA seq
909 aa
AA seq
DB search
MRRGPSFSLLSILFRKENAMDTGKESLAEMSIDAVDKLVRRVNGRRSSGAGGNGKQRVDD
TRVTWNDLDNSIDGGSLKDSLRNSEGEAETDDIDWEDGSTPIKDSLNNDNHVGDDVSRTV
TIEFSESPDSAKRKPIRRATAEEKELAELVHKVHLLCLLARGRIVDSACDDPLIQASLLS
LLPAHLLKIPEVSKLSANSLSPVVSWFHNNFRIRSSTSEKRSFQSALAFALETREGTPEE
IAALSVALFRALKLTTRFVSILDVASIKPEADRCESSSQDTSRVKRGIFNSSTLMVDRSE
QVLESPVKSFSCNENNTIHETSLKASFKRKDSHPRSNKTHSNDCPTAVRLENQVTDSFSC
EAQDKISESCISTKSQGSKRKGDLEFEMQLQMALSATATANPQISMTSDVSSLISDSSNI
SSPVKRIKTVASEQSSSHGISTAVGSRKVGSPLYWAEIYCSRENLTGKWVHVDAVNAIVD
GEQKVEAAAAACKTSLRYVVAFAGHGAKDVTRRYCMKWYKIALQRINSVWWDSVLTPLRD
LESGATGGSLEVSEVPERKIDAQPSGRNSFVASRNSLEDVELETRALTEPLPTNQQAYKN
HQLYAIERWLTKSQILHPRGPVLGFCSGHPVYPRACVQTLKTKERWLRDGLQVKAQELPA
KVLKQSGKLKKVKSSEDDEYGEADPKGTTELYGKWQLEPLQLPRAVNGIVPKNERGQVDV
WSEKCLPPGTVHLRLPRIFHVAKRLEIDYAPAMVGFEFKNGRSIPVFEGIVVCTEFKDAI
LQAYAEEEERREAAEKKRIEAEALTRWYQLLSSIITRQRLNNCYMNNSSSQMPSNIQDTN
NAYVNSKTDKQSQELRGEDMRKPISLASQLVLTKDHEHVFLAVDQSFDEETSVRTKRCSC
GFSVQVEEL
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagaggtccttccttttcactcctctctattctattcaggaaggagaatgcgatg
gacactggaaaagaaagtctggccgaaatgtcaattgacgcagtagacaaacttgtcaga
cgtgtcaatgggcgtaggtcatcaggggcaggaggaaatggcaaacagcgagttgatgat
acaagagttacatggaatgatttggataattccattgatggagggagtttgaaggattct
ttaagaaatagtgaaggagaagctgaaacagatgatattgattgggaagatggttctact
ccaattaaggattctttgaataatgataatcatgttggtgatgatgtatctaggacggtg
actattgagtttagtgagtctcctgattctgcaaaacggaagcctattcgtcgcgccact
gctgaagaaaaggaattggcagagcttgtgcataaggttcacttactttgtttacttgct
aggggcagaatagttgatagtgcttgtgatgatcctcttatccaggcttctttactctct
ctactaccagcacacttgttgaagataccagaggtctcaaaacttagcgctaattcttta
tctcctgttgtcagttggtttcataataactttcgtattagaagctctaccagtgagaag
agatcatttcagtcagctttggcctttgcacttgaaactcgtgaaggaactccagaagag
attgcagcattgtctgtggcactattcagagctttgaaacttaccacgcggtttgtgtcc
attctagatgttgcctccataaaacctgaagctgacagatgtgaatcctcaagtcaagat
acaagcagagtgaaaagagggatatttaatagttcgacattgatggtagatagatcagaa
caggtccttgagtctcctgttaaatcattctcatgcaatgagaataacaccatccatgaa
acttctctaaaggcttctttcaaacgtaaagatagtcatccaaggagcaataagactcat
tctaatgattgtcctactgcagtcagattggaaaaccaagtgacagattcattttcatgt
gaggcgcaggataagatctctgaatcatgcattagcacaaaatctcagggttcaaagagg
aaaggtgatcttgagtttgagatgcagttgcaaatggctctctccgcaacagcaactgct
aatcctcaaattagcatgacatcagatgtgagcagcttgattagtgattcatcgaatatc
tcttctccagttaaaagaattaaaacagttgcaagcgaacaatcttcttcccatggaatc
tccactgcagttggatcaaggaaagtgggatctcctctgtattgggcagaaatatactgc
agtagagaaaacttaacaggaaaatgggtgcatgtggatgctgtaaatgcaattgtagat
ggagaacagaaagttgaagctgcagcagctgcatgtaaaacatctttgcgatatgtggtt
gcatttgctggccatggtgctaaagatgtgacacgcaggtactgtatgaagtggtacaag
atagcactacagcgaattaactcagtttggtgggattcagtgttaaccccattgagggat
ttggagtcaggagcaactggaggctccttggaagtgtctgaagtacctgagaggaagatt
gatgcacaaccttctggaaggaactcctttgttgctagtagaaactctcttgaggatgtg
gagttggaaactagggctctaactgagcctcttcccactaatcagcaggcctataaaaat
catcaattatatgctattgaaagatggcttacaaagtctcagatacttcatcccaggggc
cctgttttgggtttttgttctgggcatccagtttaccctcgtgcttgtgtgcaaacactc
aaaacaaaagaaagatggttgcgtgacgggcttcaggttaaagcccaagaacttccagca
aaggtgttgaaacaatctggaaagcttaagaaagtaaaatcttcagaagatgatgaatat
ggtgaagctgatcctaaaggaactacagagttatatgggaagtggcaactagaaccctta
cagctgccccgggctgtgaatgggatcgttccaaagaatgagcgtggtcaagttgatgtg
tggtctgagaagtgcttgccaccagggaccgttcacttgagactgccaaggatatttcat
gttgccaagagattagaaattgactatgcaccagccatggttggttttgaattcaaaaat
ggtcgatctattcctgtctttgaaggtattgtggtgtgcactgagttcaaggatgcaatt
ttacaggcatatgctgaagaagaagagagaagagaagctgcagagaagaaaagaatcgag
gcggaagctcttactcggtggtatcaactcctttcatcgatcataactcgacaaaggtta
aacaactgttacatgaataattcatcatcacaaatgccaagcaacatccaagatacaaac
aacgcatatgttaatagtaaaaccgacaagcaatcgcaggaacttcggggagaagacatg
agaaagcctatatcacttgcttcacaactggttctaacaaaagatcatgaacatgtattt
ttggcagtagaccagagctttgatgaggagacttcagtgaggacaaaacggtgttcttgt
ggattttcagtccaagtggaggaattatag
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