Jatropha curcas (Barbados nut): 105638901
Help
Entry
105638901 CDS
T03922
Name
(RefSeq) ATP-dependent RNA helicase RhlE
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105638901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105638901
03009 Ribosome biogenesis [BR:
jcu03009
]
105638901
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105638901
Spliceosome [BR:
jcu03041
]
Complex A
U1 snRNP components
U1 related factors
105638901
Complex B
105638901
Ribosome biogenesis [BR:
jcu03009
]
Eukaryotic type
Pre-60S particles
Helicases
105638901
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
SWI2_SNF2
PAP_RNA-bind
Motif
Other DBs
NCBI-GeneID:
105638901
NCBI-ProteinID:
XP_037493126
LinkDB
All DBs
Position
Unknown
AA seq
577 aa
AA seq
DB search
MSYVPPHLRNSSSHATTATSTTIINTTTTAFSSLTLDSDQNANLDHSSSCSNFHSPTSNW
NSLPTLSNASRRTCSTAFQSPRTLSIPEPVFPQWNPSDRVLRLNSQQIEDVRTRLNVEVN
VASEDSLPAPAPIESFEDMCLHPSIMKDIAYHGYSRPTSIQAQAITVALSGRDLLGCAET
GSGKTAAFTIPMIQHCLAQSPIQRGDGPLALVLAPTRELAQQIEKEVKCFSRSLENFRTA
IVVGGTNIAEQRSELRAGVDVIVATPGRFIDHLQQGNTCLSRISFIVLDEADRMLDMGFE
PQIREVLHNLPKRHQTLLFSATMPVEIETLTQEYLTAPVQIKVGKVSSPTANVSQVLKKV
SENEKIDCLLAFLVEDASQAERSGHPFPLTVVFVERKTRCDEVAEALVAQGLRAVALHGG
RSQSEREAALNDFRSGSTSILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRIGRTGR
AGSAGQATSFYTDRDMFLVSQIKKAIADAEAGNTVAFATGKVARRKEREAAGLQKEVRNA
LSKSGGPASINIEDKYRYMIASANIKGEGAADSAWDD
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtacctccacaccttagaaactcaagctcacacgccactaccgccacctct
actaccattatcaacaccaccaccacagctttttcttcactaaccctagacagtgatcag
aacgctaatctcgaccattcctcatcttgttcaaatttccactctccaacttccaattgg
aactctctccctactttatccaatgcctctcgccggacctgctccactgcttttcagtcg
ccgagaaccttgtccattcctgaacctgtttttcctcagtggaatccttccgaccgcgtt
cttcgcttgaactctcaacagattgaagatgttcgtacgcggcttaatgttgaagttaat
gttgcttcggaggattcccttccagcacctgcaccaattgaatcgtttgaagatatgtgc
ttgcatccgagcatcatgaaggatattgcatatcatggatatagtaggccgacttccata
caggctcaggccattactgttgctcttagtggaagagatctgttgggttgtgctgaaact
ggtagtggcaaaactgctgcattcactattccgatgatacagcactgcttggctcaatct
cccattcagcgaggtgatggaccactagcattggtgttggctcctacaagagagcttgcc
caacagattgaaaaagaggtgaaatgttttagtagatctcttgagaacttcagaactgca
atagttgttggtggaacaaacatagctgagcagagatctgaattacgggcaggagtggat
gttattgttgctactccaggaagattcattgatcatttacaacaaggaaacacttgcctc
tctagaatatcgtttattgttctggatgaagctgatagaatgcttgatatggggtttgaa
ccacaaattagagaggtactgcacaatcttccaaaaaggcatcagactctgctgtttagt
gcaactatgcctgtggagattgaaacgttaacccaggagtacttaactgcccctgtacaa
attaaggttggaaaagttagtagcccaacagcaaatgtatctcaagttctgaaaaaagtt
tctgaaaatgagaagattgattgccttctggcttttcttgtggaggatgcgtctcaggcc
gaaagatctggtcacccctttcctttaactgttgtgtttgtggaaaggaagacaaggtgt
gatgaagttgctgaagctctggtggcacaaggcttacgggcagtcgctttgcatggtggc
cgtagtcagagtgaaagggaggctgctctgaatgacttcaggagtggctctactagtatt
ttggttgccactgatgttgcatctcgtggattggatgtcacaggagttgctcatgtaatt
aacctcgatcttccaaagacaatggaagattatgtacatcggattggaaggacgggacgt
gcaggatcagcaggccaagctacttcattttacactgatcgtgatatgttcctagtctca
caaataaagaaagcaatagcagatgcagaagctgggaacacagtggcctttgcaactggg
aaggttgcacgaaggaaagagcgagaagctgcaggtttgcaaaaggaagttaggaatgct
ctgtcaaagtccggagggcccgcatcaataaacatcgaggacaagtataggtacatgatt
gcctctgcaaatatcaagggagagggtgcggcagatagtgcttgggatgattaa
DBGET
integrated database retrieval system
