Jatropha curcas (Barbados nut): 105639147
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Entry
105639147 CDS
T03922
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03022
Basal transcription factors
jcu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105639147
09124 Replication and repair
03420 Nucleotide excision repair
105639147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105639147
03400 DNA repair and recombination proteins [BR:
jcu03400
]
105639147
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105639147
DNA repair and recombination proteins [BR:
jcu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105639147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
Motif
Other DBs
NCBI-GeneID:
105639147
NCBI-ProteinID:
XP_037494485
LinkDB
All DBs
Position
Unknown
AA seq
533 aa
AA seq
DB search
MLNLTSNQGVSYIFEFDNYNDLHVCREFVGKALSKPVESSKPADTSEAPSEQPSTEELLL
RMKLLQENSELQKLHKQFVSDGVLTDTEFWATRKKLLNADFSKKSKQRVGLKSAMLSDSK
PLIDGRTNKVTFNLTPEIVCEIFAEKPAVHQAYLSLVPNKMTDRDFWTKYCRAEYLNHSK
NAHAAAAEAAEDEELALFLKPDDILARETRRKIRCVDPTLDMEADLGDDYTHLPDHGIVR
DGIKEIAELQNEPYRRTLLQDLNRHAAVVLEGKAIDDEQLKDTKTVAEALAQSKQGHKTL
YREPDGSDKERSSRISQMMEIEDLQGSNDLPLAPLCIKDPRDYFDSQQVTALKTSRDTPV
GTETVNCSLTSKEAYGSLRDSISEIKVVGLNDPVVKPEVAMKVLSVLTHNISSTKYNIGK
NPRESVLDRFPNTIKDELLHHWMSVEELLKHYWSSYPITTAYLYAKVSRLKDAMSKIDSQ
LQRMKESVQSDLRNQLTLLIRPMQQALEAAMQHYDADLQKRSEKSGEKPNGYV
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatctcacctcaaatcagggtgtaagctacatatttgagtttgacaattacaat
gacctccatgtttgcagagaatttgtgggaaaagcgctatcaaagcctgtagagtcttca
aagcctgcagatacttcagaagctccttctgaacaacctagtacagaagaactgcttctt
cgaatgaaactgctgcaagaaaatagtgagttgcagaaacttcataagcagtttgtgagt
gatggtgtattgacagatactgaattctgggcaacaagaaagaagttgctaaatgcggac
ttcagcaaaaaatcaaagcaacgggtgggtcttaaaagtgctatgctttctgattcaaag
ccactgattgatgggcggacaaacaaggttacctttaatttgacaccagagattgtatgc
gagatttttgcagagaaaccagctgttcaccaagcgtacttgagtttagttcccaacaag
atgacggatagggatttctggaccaaatattgtagagccgaatacctcaatcactcgaaa
aatgctcatgctgcagcagcagaagctgctgaagatgaggaacttgccctttttctgaaa
cctgatgatattttggcgagggaaactcggcggaagatcagatgtgttgatccaactcta
gatatggaagctgacctaggggatgattatacacatttgccagatcatgggattgttcgt
gatggtattaaggaaatagcagaattacagaatgagccatacagaaggactttgttacag
gacctgaaccgccatgctgctgttgttcttgaaggaaaagccatagatgatgagcagttg
aaagacacaaaaactgtagcagaggcacttgcacagtcaaaacaggggcataaaacgcta
tatagagaacctgatgggagtgacaaggaaagatcgagtagaatttcccaaatgatggaa
attgaggatcttcaaggatcgaatgatcttcctttagcacctctttgcattaaggatccg
cgggactattttgattctcaacaagttactgcacttaaaacatcaagagatacaccagtt
ggaacagaaacagtgaactgcagcttgacctcaaaggaagcttatggttctttgagggat
tccatttctgaaattaaagtggtgggattgaatgatcctgtagttaaacctgaagttgct
atgaaggttctctctgtactgacacataatatctcgagtaccaagtataatattggaaag
aatcctagggagagcgtcttggacaggtttccaaacacaataaaggatgaactgctacat
cactggatgtctgttgaggagttgttgaaacattactggtcatcatatccaataactact
gcatatctttatgctaaggtaagcagactgaaggatgcaatgtcaaaaattgattcacag
ttgcagaggatgaaggaatccgtgcagtcagaccttcgaaatcaacttacactccttata
cgtccaatgcaacaggctctagaggccgccatgcaacattatgatgcggacttgcagaag
agatcggagaagagtggagagaaaccaaacggctatgtctag
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