Jatropha curcas (Barbados nut): 105639743
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Entry
105639743 CDS
T03922
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105639743
09123 Folding, sorting and degradation
03018 RNA degradation
105639743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105639743
03041 Spliceosome [BR:
jcu03041
]
105639743
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105639743
mRNA cycle factors
Stress granule specific factors
105639743
Spliceosome [BR:
jcu03041
]
Complex C
Other components
Complex C specific factors
105639743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_occluded
RRM_5
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
105639743
NCBI-ProteinID:
XP_037495544
LinkDB
All DBs
Position
Unknown
AA seq
642 aa
AA seq
DB search
MSQVQSQPQGPVSAPVGMASNGGNQFVSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRV
CRDLTSRRSLGYGYVNYNNVHDAAQALEVLNFTPVNGKPIRIMYSYRDPTIRKSGAGNIY
IKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYGFVQFDNEESAKNAIDKLNGM
LLNDKQVYVGPFLRRQERESGTDKTKFNNVYVKNLSETTTEEDLKKIFGEYGAITSAVVM
RDGDGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQT
LKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKGSGFVAYST
AEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPAMAPAVGPRMPMYPH
GTPGIGQQLFYGQGPPAIVPPQPGFGYQQQLVPGMRPNFFVPMVQPGQQAQRPSGRRSGA
GPVQPQQPLPMMQPQMLPRGRVYRYPPGRSMPDVPMAGLPGGMLPVPYDMGGMPFRDGAF
SQPMQTGALATALANATPEQQRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQTEVLHLL
ESPESLEAKVAEAMEVLRTVQQQANSPTNRMATLSLNENLVS
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaggttcagtcacagccacaaggacctgtttctgctccagttggaatggcaagc
aatggaggaaaccaattcgtctcaacatcgttatatgttggtgatcttgaacaaaatgta
accgaaactcagctctatgatttgtttaatcagctgggtcagatcgtttcaattcgggtc
tgcagggacttgacctctagaaggtcacttggatatggctatgtcaattataacaacgta
catgatgcggcacaggcattagaagtactgaatttcactcctgtcaatggcaagccaatt
aggataatgtattcatatcgtgatcctactattcgcaaaagtggtgcaggaaatatatat
atcaagaatttggacaaggcaattgacaacaaagctctacatgacacattttctgcattt
ggaaatattttatcttgcaaagtggcaactgactctgcgggtcagtctttaggatatggg
tttgtacaatttgataatgaggagtctgctaaaaacgcaattgataagttgaatggtatg
ttactgaatgacaaacaagtttatgttggacctttcctccgcagacaagaaagagagtca
ggcacagataagacaaaattcaataatgtttatgtaaagaatctttcagagactacaact
gaggaggatttgaagaaaatttttggtgaatatggggctattactagtgctgtagtgatg
agagatggggatggcaagtccagatgctttggatttgtcaactttgagaatccagatgat
gcagctcgatcagtcgaggctctcaatgggaagacatttgatgaaaaggagtggtatgtt
ggaaaagcacagaaaaaatctgagagagaagttgaattaaaagggcagtttgagcagact
ttgaaagagacggtggacaaatttgaaggattgaatctatatgttaagaacctagacgat
agcatcacggatgacaagctgaaggaattattctcagaatttggtacaattacttcatgc
aaggttatgcgtgatcctaatggtgtcagtaaaggatcaggctttgttgcctactcaact
gctgaagaagcatctaaagctcttactgagatgaatggtaaaatgatagttagcaagcca
ttgtatgttgcacttgcgcagaggaaagaagaacggagagctcgattgcaggcacaattt
tcacaaatgcgtcctgctatggcacctgcagttggcccccgtatgccaatgtatccccat
ggcactccaggtattggacagcaactattctatggtcaaggccctcctgctattgtccct
ccccagcctggatttgggtatcagcaacaactggttcctggaatgcggccaaattttttt
gtcccaatggtccaaccaggtcagcaggctcagcgccccagtggccggagatctggagca
gggcctgtgcagcctcagcaaccacttcccatgatgcagccacagatgcttccaaggggg
cgtgtctatcgttaccctcctggtcgcagcatgcctgatgttcccatggctggtcttcct
ggtggcatgcttcctgttccttatgatatggggggaatgccatttagagatggtgcgttt
tcacagcctatgcagactggtgctttggcaactgcccttgctaatgcaacgcctgagcaa
cagaggacgttgctcggtgaaaatttatatccacttgtagaccagttggagcatgaaaat
gctgctaaggttactggcatgcttctagagatggaccagactgaggttttgcatttgctg
gagtctccagaatccctggaagccaaagttgctgaagcaatggaagttcttagaaccgtt
cagcagcaggctaatagtccaaccaatcgaatggcaacactttccctgaatgagaaccta
gtttcttaa
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