Jatropha curcas (Barbados nut): 105640652
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Entry
105640652 CDS
T03922
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105640652
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105640652
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105640652
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
LisH_CTF50
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_IFT122_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
CFAP251_N
WD40_RFWD3
DSE1_N
Beta-prop_NOL10_N
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ASA1
Cytochrom_D1
Beta-prop_DCAF4
Beta-prop_SCAP
Ge1_WD40
Beta-prop_NWD2_C
PAC11
Beta-prop_IFT140_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
105640652
NCBI-ProteinID:
XP_012080411
UniProt:
A0A067K5H3
LinkDB
All DBs
Position
Unknown
AA seq
440 aa
AA seq
DB search
MENSSLEQTLQDGKLRRQINSLIVAHLRDNSLTQAASAVASATMTPLNVEAPPNKLLELV
AKGLAAEKDEMLRGITSTPMYDLGTLVPAAYGSIPAHRVASIDFSALQDTKGSSKNFPKH
ETRHLSEHKNIARCARFSPDGRFVATGSADTSIKLFEISKIKQMLLSDARDGPVRPVIRT
FYDHIQPINDLDFHPQSTILISGAKDHTIKFFDFSKATAKRAFRVIQDTHNVRSVTFHPS
GDFLLAGTDHQIAHLYDVNTFQCYLSSTVNAPEIGTNGAINQVRYSSTGGVYVTASKDGA
VRLWDGVNANCVRSIDGAHGTAEATSASFTKDQRFVLSCGKDSTVKLWEVGSGRLVKQYL
GATHTQLRCQAVFNDTEEFVLSIDEASNEIVIWDALTAERVAKWVSNHNGAPRWIEHSPT
EAAFISCGTDRSVRFWKETL
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatagtagcttggagcagacactgcaagatggcaagctccgtcgacagatcaat
tccctcatagttgctcatcttcgcgacaacagtcttacacaggctgcaagtgcagttgca
tcagccacaatgacaccattgaatgtggaggctccgcctaataagcttcttgagctggtt
gctaagggtcttgcagcagaaaaggatgagatgttaagagggattacttccactccaatg
tatgatttgggcacgctggtacctgcagcttacggttcaatcccagctcaccgtgttgct
tccattgattttagtgccttgcaggacacaaaaggctcatcaaaaaattttccgaagcat
gagacacggcatctttctgagcacaagaatattgcgagatgtgcaagatttagtcctgat
ggaaggtttgttgctactggaagtgcagacacatcaattaagctatttgagatttcaaaa
atcaagcagatgctgctgtcagatgcaagggatggtcccgtccgacctgtcataaggaca
ttttatgatcatatacaaccaataaatgatttggacttccaccctcagagtactattctt
atatcaggagccaaggaccacacaataaaattctttgacttttccaaagctactgcaaag
agagcattcagagttatccaggatactcacaacgttaggtctgtgactttccatccttct
ggggatttccttcttgcaggaactgatcatcagattgcacacctgtatgatgtcaataca
tttcagtgttatctatcttctactgttaatgccccagaaattggaactaatggagccatt
aatcaggtgaggtattcatctacaggtggcgtgtatgtaacagcatctaaagatggtgct
gtgcggttgtgggatggggtaaatgcaaattgtgtgcgatctatagatggtgcacacgga
acagcagaggccaccagtgcaagttttacaaaggatcaacggtttgttctctcttgtggg
aaggactctactgttaagctttgggaggttggcagtgggagattggtcaaacaatatcta
ggagctacacatacacaactgaggtgccaggctgttttcaacgacactgaagaatttgta
ttgtccatagatgaagcaagcaatgagattgttatctgggatgctctaacagcagagaga
gtggcaaagtgggtgtcgaaccataatggtgcaccccgttggattgagcactcgccaaca
gaagcagcttttatttcttgtggaactgacagatcggtacggttctggaaggaaactctc
tga
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