Jatropha curcas (Barbados nut): 105641287
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Entry
105641287 CDS
T03922
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105641287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105641287
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105641287
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_12
TPR_2
TPR_1
TPR_14
TPR_MalT
TPR_8
TPR_10
TPR_19
ARM_TT21_N
ARM_TT21
SRP_TPR_like
DUF627
Motif
Other DBs
NCBI-GeneID:
105641287
NCBI-ProteinID:
XP_012081190
UniProt:
A0A067K2C6
LinkDB
All DBs
Position
Unknown
AA seq
866 aa
AA seq
DB search
MDSRDSSSSQSTPAANRDSTAVGSSSTAEDDAVLSFTAALAKDAALHFQSRRFAECLAVL
HQLKLKKEDDPKVIHNIAITEFFQDGCSDPRKLLEVLNNVKKKNEQLAQASGEQVDSVSN
AGNKVILGSKGSGTTTYQFSAANSSTLVYMDEFDPAVTTLNIAIIWFHLHEYTKALSVLE
PLYHNIEPIDETTALHVCLLLLDVALACRDASKSADVLVYLEKAFGVGCVSQGDNASTTQ
QQSANLVAKSSSIPSSSSVADASSSDLVHSGNALENSLSRTLSLSEDTLEYESMFSLDIS
GQNLTRPSGLSASNDISRTQLDRSTSTIDLKLKLQLYKVRFLLLTRNLKQAKREVKLAMN
IARGRDSSTALLLKSQLEYARGNHRKAIKLLMASSNRTEMGISSMLNNLGCIYYQLGKYQ
ASSVLFSKALSSCASLRKDKPMKLLTISQDKSLLIMYNCGIQQLACGKPLLAARCFQKAS
LIFYNYPILWLRLAECCLLALEKGLIKASRIPSDQSEIIVHVIGKGKWRHLAIENGSLRN
GYVDSIEKEDLFLGSDGQPKLSVSLARQCLLNALHLLDSSDMNHLTSSLPSSISLDENES
VEAVSLKNSNHKNLTGLDTKTSAVSVGLGQLNANGDTKEQKGGTSQEIMQNFVSDFEDIL
RRENQMIKQALLANLAYVELELENPEKALSTAKSLLELPECSRIYTFLGRMYAAEALCLL
NKPKEAAEHLSRYFSGGNSVELPFSQEDCERWRVEKTFDCEEPNGGSATVKNSSSEESRG
IVFLKPEEARGILYANFATLYAAQGDLERAHHFVTQALSLVPDSPEATLTAIYVDLMLGK
SQAAISKLKQCSRVRFLPSHVQLNKS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atggactcgcgagattcgtcttcatcgcaatcgacgcccgccgctaatcgagattctacg
gcggttggctcgtcatccactgccgaggacgatgccgttctttctttcaccgctgctctt
gccaaggacgcagccttgcatttccagtctcgccgcttcgctgagtgccttgccgttttg
catcagcttaagctaaagaaagaagacgatcccaaagttattcataatattgctattacg
gaattctttcaagatggatgttcagatccaaggaagttgcttgaagttcttaataatgtg
aagaagaaaaatgaacagcttgctcaagcatcaggagaacaggttgactctgtgagtaat
gccggaaataaagttattttggggtccaagggaagtggtacaaccacataccaattttct
gctgcaaatagttcgacacttgtttacatggatgagtttgatccagcagtcacaacatta
aacatagcaattatctggtttcatcttcatgaatatacaaaggcattatctgttttggaa
cctttgtatcacaatatcgaacctattgatgagacaactgctctccatgtttgccttctg
ttgctggatgttgcacttgcctgccgggatgcatcaaaatcggctgatgtacttgtttat
ctggaaaaagcttttggtgttggctgtgtgagtcaaggtgataatgcaagcaccacacag
caacaatctgcaaatctagttgcaaaatcatcctctattccgagcagttcttcagtagca
gatgcttccagttcagatttagtgcatagtgggaatgccttggaaaattctttatcaaga
actttatcgttatcggaggatacacttgagtatgagtccatgttttcactggacataagt
ggacagaacttaaccaggccatctggtctctcagcttcaaatgatatttcgaggacccaa
cttgataggtctacatctacaattgatctgaagcttaagttgcagctctacaaggtccgt
tttctgcttctcacaaggaatttaaaacaagcaaagcgcgaagtcaagcttgctatgaat
attgcacgtgggagagactcatccacagctctcctcttgaagtctcagctagaatatgct
cgtggaaaccatcgtaaagccatcaagttgctgatggcatcaagtaaccggacggagatg
gggatttcaagcatgttgaacaaccttggttgcatttattatcagcttggaaaataccaa
gcttcatctgtcctcttctccaaggcacttagtagttgtgcatctctccggaaggacaag
cctatgaagctgttaactatctcacaagataaatctcttctcattatgtacaattgtggc
atacaacaattggcttgtgggaaacccttactggctgctcgatgtttccagaaggctagt
ttgatattttacaactaccctatcttgtggctccggcttgctgaatgttgcctcttggct
ttagagaagggacttataaaagccagtcgaattccatcagatcaatctgaaatcatagtt
catgttataggcaagggaaaatggaggcatcttgcaatagaaaatgggagtttaagaaat
ggatatgtggattctattgaaaaggaagacttgtttttgggcagcgatggccaacctaag
ctctctgtttctcttgcccggcagtgtcttctcaatgcgttgcatttgttggactcttct
gatatgaaccatttgacgtccagtttgccttccagtatttcattggatgaaaatgaatca
gttgaagcagtatctctgaagaactcaaaccacaagaatttaactggccttgatacaaaa
acgtcagctgtatctgttggcttaggtcagcttaatgcgaatggggacacaaaagagcag
aaaggaggtacaagtcaggagatcatgcagaattttgtttctgactttgaagatattctt
aggagagagaatcagatgattaagcaagctcttcttgctaacttggcatatgtagagttg
gaacttgaaaatcctgaaaaggccttatccactgccaagtctctcctggagcttccagaa
tgttcaagaatatatacttttcttggtcgtatgtatgcagcagaggccctctgtttgttg
aacaagccaaaggaagctgcggaacacttatcaagatatttttctggaggaaatagtgta
gagctgcctttcagccaggaggactgtgagcgatggcgagtggagaaaacttttgattgt
gaagagccaaacggaggatcagccactgtcaagaattcttcttcggaggaatcacgaggt
attgttttcctcaagcctgaagaggcacgaggtattctgtatgcgaattttgcaaccttg
tatgcagcccaaggtgatctcgagcgggctcaccattttgtgacacaagcattgtccctt
gtacctgacagtccggaggccactttgacagcaatttatgtggatcttatgctcggtaag
tcacaagcagctatttccaagttaaaacaatgtagtcgggtcaggttccttccaagccat
gtacaattgaataaatcttga
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