Jatropha curcas (Barbados nut): 105642321
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Entry
105642321 CDS
T03922
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105642321
09123 Folding, sorting and degradation
03018 RNA degradation
105642321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105642321
03041 Spliceosome [BR:
jcu03041
]
105642321
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105642321
mRNA cycle factors
Stress granule specific factors
105642321
Spliceosome [BR:
jcu03041
]
Complex C
Other components
Complex C specific factors
105642321
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
Nup35_RRM
RRM_occluded
Nup35_RRM_2
RRM_3
Motif
Other DBs
NCBI-GeneID:
105642321
NCBI-ProteinID:
XP_012082518
UniProt:
A0A067K2I6
LinkDB
All DBs
Position
Unknown
AA seq
636 aa
AA seq
DB search
MAVPSTVSAAGTASLYVGDLHPEVTDGVLFDAFSEFKSLISVRICRDLSTGRSLCYGYIN
FISPQEAIWAIETKNHTPLLGKLMRVMWSHRDPDARKSGIGNVFVKNLSETIDNVGLQDL
FRKFGTILSCKVATFEDGKSKGHGFVQFDSEDSANSAIEELNGSIVGDKQIYVGKFVKKS
DRVLPSPDAKYTNLYVKNLDTEITEEVLLEKFSEFGQIVSLVIVKDETGGSRGFGFVNFD
NPDDAKHAMEKMNGTELGSKILFVGRAQKKAEREQILRRQFEEKRNEQILKYKGSNVYVK
NIDDDVADEELRQHFSQCGTITSAKLMRDDKGRSRGFGFVCFSSPEEANKAVNTLHGHLF
HRKPLYVAIAQRKEDRLAQLQLQYAHRMAGLAGPSSSVIPGGYPPLYYAAPSGVVPQVPQ
RPGLMYQPLSMRPGWSANGFVPPTRPTFQPSQLSVTSNTQRQHKQSRGRMNGHVFPQGGN
HSIPYIQQPGQPLTSSKDSTNQRTGQAKYVPNGRTREVGKGSGVSSTVLNSLGPVSEGSE
MLSSMLAAASPEEQKQILGERLYPLVQKHKPDLVAKITGMLLEMDNSELLLLLESPESLA
AKVEEAVQVLKISKTKVSGQNTLHPTTYLSAEVAVN
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccttcgacggtctcggcggccggtacggcgtcgctgtacgttggggacctg
caccctgaggtcactgatggcgtgctttttgatgcattctctgagttcaagagccttatt
tccgttcgcatatgtagagacttgtctactggcaggtctctctgttatggttacatcaac
tttatctctccacaagaggctatctgggctattgagacaaagaatcacactcccttgctt
ggaaagttgatgagagtcatgtggtcacaccgtgatcctgatgcaagaaaaagtggaata
ggaaatgtgtttgttaagaatttgagcgagacaattgataatgtggggcttcaggattta
tttcgtaaatttgggactatattatcttgcaaagttgccacgtttgaggatggaaagagt
aaaggccatggctttgttcagtttgattcagaggattccgcaaattctgctattgaggag
ctaaatggttccattgttggtgataagcagatatatgttggaaagtttgttaagaagagt
gatagagttttgcctagccctgatgctaaatatacaaatttatatgtgaaaaacttggat
actgaaataacggaagaggttctgctggagaagttctcggaatttgggcaaatagttagc
ctggtgattgtaaaggatgaaactggaggctcaagaggttttggctttgtcaattttgat
aacccagatgatgccaaacacgctatggaaaaaatgaatggaacagaactaggttcaaag
attctttttgtaggaagagcacaaaagaaagcagagcgtgaacaaattttgcggcgccag
tttgaggaaaagcgcaacgagcagatcttgaaatacaagggctcaaatgtatatgtgaaa
aacattgatgatgatgttgctgatgaagagctgagacaacacttcagtcaatgtggcaca
attacatctgcaaagcttatgagagacgataaagggagaagcagggggtttggatttgta
tgcttctccagccctgaggaggccaataaagctgtgaacactttgcacggacacttgttt
caccggaagccattatatgtggctattgctcaaaggaaggaagacagactagcacaattg
cagctgcagtatgctcatcggatggctggattagctggaccctccagttctgttattcct
ggtggatatcctcccctgtactacgcagctccttctggtgttgttccacaagtacctcaa
aggcctgggttgatgtaccagcctttaagcatgaggccaggatggagtgctaatggcttt
gtacctccaaccagaccgacctttcaaccatcacaactttcagttacgtctaatactcaa
agacaacacaagcagagcagagggaggatgaatggacatgtttttccacagggtggtaat
cactctatcccatatattcaacagcctgggcaaccactaacttcatcaaaagattcaacc
aatcagcgtactgggcaggctaagtatgtaccaaatggccgaacacgggaggtgggaaaa
ggatctggagtctcttctactgttctcaattctcttggtcctgtatctgaaggatcagag
atgctgagtagcatgcttgctgctgcatcacctgaagagcaaaaacagattctaggggag
cggctttacccacttgtccaaaagcacaagcctgatcttgttgcaaagattactggaatg
cttctggagatggacaactcagaattacttctattgttggagtccccggagtctctagct
gccaaggtggaggaagctgtgcaagtgctcaagatctcaaagacaaaagtatctggtcaa
aacacccttcatccgacgacttacctctctgctgaggttgcagtcaattga
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