Jatropha curcas (Barbados nut): 105643012
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Entry
105643012 CDS
T03922
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105643012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105643012
03036 Chromosome and associated proteins [BR:
jcu03036
]
105643012
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105643012
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105643012
mRNA degradation factors
5'-3' decay
Decapping complex
105643012
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105643012
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
TFIIA
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
105643012
NCBI-ProteinID:
XP_012083429
UniProt:
A0A067KA17
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MNGNNRGRYPPGIGAGRGAGMNANPSFQSRVPQQQYVQRNMVQNHQQFQHQQHQHHQQQQ
QQQQQQQQQWLRRSQLPAADSSVDEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDV
TATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAF
CIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMR
LYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSVEQLIRFLPPTR
QILMFSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSK
LQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCT
DLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQ
ELGTEIKQIPPHIDQAIYCR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtaataatagagggcggtatccgccagggatcggtgccgggagaggcgcaggc
atgaacgcaaaccctagttttcagtcacgggttccgcagcagcagtatgtgcaaaggaat
atggtgcagaatcaccagcagtttcaacatcaacaacaccagcatcaccaacagcaacag
cagcagcagcagcagcaacaacagcagtggctgaggaggagccagttacctgctgcggat
tccagtgttgacgaggttgagaagaccgttcagtctgaggccgttgactccagttcacaa
gattggaaggcaaggttaaagataccaccagctgatacacgctacaaaacagaggatgtc
acagcgacaaaaggaaacgagtttgaggactattttctgaaaagggaactgcttatggga
atatatgagaagggcttcgaaagaccgtctcctattcaggaagaaagcataccaattgct
cttactggtagtgatattcttgctagagctaaaaatgggactgggaaaacggcagctttt
tgtattcctgccttggaaaagattgaccaagataacaatgtcattcaagttgttatactt
gttccaacaagggagttggctcttcagacatcacaagtttgcaaggagcttgggaagcac
ttgaaaattcaagtgatggttactacaggtggtacaagtctaaaagatgacatcatgcgt
ttatatcaacctgtccatttgctggttggaactcctggaagaatactggaccttgcaaaa
aagggtgtttgcattttgaaagactgttcaatgcttgttatggatgaggctgacaaactt
ttgtctccagaatttcaaccttctgtggagcagctgatccgttttcttcctccaactcgt
cagattttgatgttttctgctacatttcctgttactgttaaggatttcaaggatagatat
ttacacaagccttatattatcaatcttatggatgagcttactttgaagggtattacgcag
tattatgcttttgttgaagaacgacagaaagtccactgtctaaacactcttttctctaag
cttcaaataaaccaatctatcattttctgcaactcggtgaatcgtgtagaactgttggcc
aagaagatcacagaacttggatattcttgtttttatatccatgctaagatgttgcaagac
catcgcaacagagtgtttcatgacttccgcaatggtgcatgcaggaatcttgtctgcacg
gatttgtttaccaggggtatagacatccaagctgtgaacgtagttattaactttgatttc
cccaagaattctgagacgtatcttcacagggttggtcgatcaggaaggttcgggcacctt
ggtttggctgtgaatttgattacctatgaggaccgctttaacttgtataggattgagcaa
gagcttgggactgaaattaagcaaattcctcctcatattgatcaggcaatttattgccgg
taa
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