Jatropha curcas (Barbados nut): 105643393
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Entry
105643393 CDS
T03922
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 4
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105643393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105643393
Enzymes [BR:
jcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105643393
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105643393
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105643393
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-GeneID:
105643393
NCBI-ProteinID:
XP_037495533
LinkDB
All DBs
Position
Unknown
AA seq
174 aa
AA seq
DB search
MAAFKLKDAFNHTIIVANTHLYWDPEWTDVKLAQAKYLLSRISQFKALVSDKFDCTPSIV
LAGDFNSTPGDKVYQYLVSGNSSITPLAECLDELPIPLSSVYGHLRGEPPFTNCTPDFTN
TLDYIFFSPDEKIKPVSFLELPEPNSPDVLGGLPNYSHPSDHLPIGAEFEISRE
NT seq
525 nt
NT seq
+upstream
nt +downstream
nt
atggctgcatttaaactcaaggatgcttttaatcatacaattattgtagcaaacactcat
ctttactgggatccagaatggactgatgtcaagcttgcccaagctaaatatcttctatcg
cgcatatctcaatttaaggctctagtttctgacaagtttgattgtacaccctccatcgtt
ctggctggtgacttcaattctacccctggagacaaggtttatcagtatcttgtttcgggc
aactcttcaattacaccattagcagaatgcctggatgagcttcctattcccttatccagc
gtttatggtcatctaagaggagaaccaccgttcacaaattgcacccctgacttcacaaat
acacttgattatatattcttttcccctgatgagaaaataaaaccagtcagtttcctagaa
cttccagaaccaaattcgcctgatgttcttggcggattaccaaactatagccatccaagt
gaccatctaccgattggtgctgaatttgaaatctccagggaataa
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integrated database retrieval system
