Jatropha curcas (Barbados nut): 105643535
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Entry
105643535 CDS
T03922
Name
(RefSeq) phytochrome B isoform X1
KO
K12121
phytochrome B
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
105643535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_8
PAS_3
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-GeneID:
105643535
NCBI-ProteinID:
XP_012084068
UniProt:
A0A067JVA7
LinkDB
All DBs
Position
Unknown
AA seq
1143 aa
AA seq
DB search
MASGGRAAGQSPQRHLHQNQSQNHQQVAPQSSGTSNLRVHNTESVSKAIAQYTVDAQLHA
VFEQSGESGKSFDYSQSVRTTNQSVPEQQITAYLSKIQRGGHIQPFGCMITVDEGSFRVT
GYSENAREMLGLTPQSVPSLEKPEILSIGTDVRTLFTPSSAVLLEKAFGAREITLLNPLW
IHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQSLPGG
DIKLLCDTVVDCVRELTGYDRVMVYKFHEDEHGEVVAENKRSDLEPYIGLHYPATDIPQA
SRFLFKQSRVRMIVDCHATPVRIIQDEALMQPLCLVGSTLRAPHGCHAQYMANMGSIASL
AMAVIINGNDEEAIGGRNLMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMELQ
LASQLSEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTP
AEAQIKDIVEWLLRFHGDSTGLSTDSLADAGYPGAVSLGDAVCGMAVAYITKRDFLFWFR
SHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSIPWENAEMDAIHSLQLIL
RDSFRDAEATNSKAVTNAQLGDLELQGMDELSSVAREMVRLIETATAPIFAVDADGRING
WNAKVAELTGLSVEEAMGKSLVHDLIYKEYEETVDKLLHHALRGEEDKNVEIKMRTFGSE
HEKKAVFVVVNACSSKDYMNNIVGVCFVGQDITDQKVVMDKFIHIEGDYRAIIHSPNPLI
PPIFASDENTCCLEWNTAMEKLTGWGRSEIIGKMLVGEVFGSCCRLKGPDALTKFMIVLH
NAIGGQDTDKFPFSFFDRNGKFMQALLTANKRLNMDGQIIGAFCFLQIASPELQQALKVQ
RQQERKTFTRMKELAYICQEIKNPLSGIRFTNSLLEATDLTEVQKQFLETSAACEKQMFK
IIRDVDLESIEDGSLELEKAEFFIGNVIDAVVSQVMLLLRERNLQLIRDIPEEVKSLAVY
GDQVRIQQVLADFLLNMVRCAPSSEGWVEIHVCPKLKQTSDGLSVVHMEFRMVCPGEGLP
PELVQDMFHSCRWTTQEGLGLSMCRKILKLMQGEVQYIRESERCYFLVILDLPLCQRGAK
SVD
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggcatctggtggcagagcagcggggcagtcaccccaacggcacctgcaccaaaatcaa
agccaaaaccaccagcaagtagctcctcagtcctcgggcaccagcaacttgagggtccac
aacaccgagtctgtaagtaaagcaattgctcagtacacagtggacgcgcagctccatgcg
gtttttgaacaatcaggtgagtcgggtaagtcgtttgattactcgcaatcggtgagaacc
actaaccagtcagtccctgaacagcaaatcactgcttacctatctaaaatccaacgtggt
ggccatatccagccttttgggtgcatgatcactgttgatgaaggttcttttagggttact
gggtatagcgaaaacgcacgtgaaatgctcggtttaacgcctcaatcagtaccttctctt
gaaaaaccagaaatcctttcgattgggactgatgtgcgcacccttttcacgccctcgagt
gcggttttgctggaaaaagcatttggggcaagagaaatcacgttactcaaccctctatgg
attcactccaagaactcgggaaaacccttttacgcgattttgcataggatagatgttggg
attgttattgatttggagcctgctaggacggaggaccctgctttatcaatagccggggct
gtgcagtcacagaagttagcagttcgtgcgatttctcgtttacagtcacttcctggtggg
gatattaagctgttgtgtgatactgtggtggactgtgtgagggagcttactgggtatgat
agagttatggtttacaagtttcatgaggatgaacatggtgaggttgtagcagagaacaaa
aggtctgatttagaaccttacattggtttacattatcctgcaactgatatacctcaggct
tctaggtttttgtttaagcagagtagggttagaatgatagtggattgccatgccacacct
gtccgtattattcaagatgaagcactaatgcagcctttgtgcttggttggttcaactctt
cgtgcccctcatggttgtcatgctcaatatatggcgaatatgggttcaattgcctcattg
gcaatggcggtcattattaatggaaatgatgaggaagctattggtggaaggaatttgatg
aggctttggggtttagttgtttgtcatcacacttctgcaaggagcattccttttccactt
cgttatgcttgcgagttcctaatgcaggcctttgggcttcagttgaatatggaattacaa
ttggcgtcacagctttcagagaagcgtgttctgaggactcaaacgctcttgtgcgatatg
cttctgcgtgactctcctactggcattgttactcaaagcccaagtatcatggaccttgtg
aaatgtgatggggcagcactttattaccaaggaaagtattacccactaggtgtaacccca
gctgaagctcaaataaaagatattgtggagtggttgctgagatttcatggagactctaca
ggtttaagcacagacagtttggctgatgctgggtaccctggggcagtatcacttggtgat
gcagtttgcggcatggctgttgcttatatcactaagagggatttcttattttggttccga
tctcacacagcgaaggagatcaaatggggtggtgcaaagcatcatccagaggacaaggac
gatgggcagaggatgcatccacgctcttcattcaaggcattcttggaagtggtaaaaagc
cgaagtataccatgggagaacgcagaaatggatgctattcattctttgcagcttattctt
cgagactcatttagggatgctgaagcaaccaattctaaggctgttacaaatgcacagctt
ggagatctggagttgcaagggatggatgaactcagctcagttgcaagagaaatggttagg
ttaatagagactgcaactgctccaatatttgctgttgatgctgatggccgcataaatggg
tggaatgcaaaggttgctgagttaacggggctttcagttgaggaagctatggggaagtct
ttggttcatgatcttatttataaggaatacgaagaaactgttgacaagcttcttcatcat
gctttaagaggcgaagaagataagaatgtagagataaaaatgaggacatttggctccgaa
catgaaaagaaggctgttttcgtagtggtgaatgcttgttctagcaaagattacatgaac
aatatagttggagtttgctttgttggtcaggatattactgatcaaaaagtggtaatggac
aaattcatccatatcgaaggtgattacagggctattattcatagtcccaatcctttaata
cctccaatatttgcttcagatgaaaacacttgctgcttggagtggaacactgccatggaa
aagctcaccgggtggggccgaagtgaaattattgggaagatgctggttggggaggttttt
ggcagttgctgtcggctcaagggccctgatgcattgaccaaatttatgattgtgttgcac
aatgcaattggaggacaggatactgacaagtttccattttctttctttgaccggaatgga
aaattcatgcaagctcttttgacagcaaacaagagattaaatatggatggacagattatt
ggagccttctgcttcttgcagattgcaagtcctgagttacaacaagctttgaaagtccag
aggcaacaggagagaaaaacctttacaagaatgaaagagttggcttatatttgccaggaa
ataaagaatcctctaagcggtatacggtttacaaactcacttttggaggcaacagacttg
accgaggtccaaaagcagtttcttgaaacgagtgctgcttgtgagaagcagatgtttaag
atcattcgagatgttgatctggagagcattgaagatggttcactggagcttgagaaggcc
gaatttttcattgggaatgtcatagatgctgtagttagccaagtgatgttactgctgagg
gaaagaaatctacaattgattcgtgatattccagaggaagtaaaatctctggctgtatac
ggtgatcaagtaagaattcaacaggtgttggctgatttcttgttgaatatggttcgttgt
gcaccatcttcagaaggttgggtagagattcatgtttgcccaaaactgaagcagacctcc
gatgggctatctgttgtgcatatggaattcaggatggtttgccccggtgaaggtcttcct
cctgaactagtccaggacatgttccacagctgccgatggacgactcaagaaggcctagga
ctcagtatgtgcaggaaaattttgaagcttatgcaaggtgaagtccaatacatcagagag
tcagaaagatgttatttcttagttatcctcgatcttcccctgtgtcagagaggtgctaaa
agtgttgattag
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