Jatropha curcas (Barbados nut): 105643647
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Entry
105643647 CDS
T03922
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 50 isoform X1
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
jcu
Jatropha curcas (Barbados nut)
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105643647
03009 Ribosome biogenesis [BR:
jcu03009
]
105643647
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105643647
Spliceosome [BR:
jcu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105643647
Ribosome biogenesis [BR:
jcu03009
]
Eukaryotic type
90S particles
Helicases
105643647
Pre-60S particles
105643647
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
105643647
NCBI-ProteinID:
XP_012084225
LinkDB
All DBs
Position
Unknown
AA seq
650 aa
AA seq
DB search
MLTIAPPHPLSSFRLQITDSHSQSHRGVVFDYVSKSGAKPFALVRAACSSTRLNTPFQSV
TELADGGGVCSHSPNKEDEDATSGIANPGAVTKTANPTAGSKRLSGNFRKLKAQKVKFLM
MKQKVRKHADVSAAADADFDTLVTSYAKSDSTDKSCGDEMATRRGEKMKVSSSNKKLSEY
QTLDYEIMPDKPVKSIPRRAGTVHAGSSSYRRGWGNVGLESQSANPLQRKHKFSAQNDFF
SRKSFRDLGCSQFMMESLKQQSFLRPSNIQAMAFTPVIEGKCCVIADQSGSGKTLAYLIP
VIQRLRLEELQGLGESLSQNPRVLIMVPTAELASQVLNNCRSMSKFGVPFRSMAATGGFS
QRTQLQNLEQGVDILIVTPGRFLFLIKEGFLKLTNLKCSVLDEVDILFKDDDFEFALQSL
MNSSPLATQYLFVTATLPVDVYNKLIEIFPDCEMIMGPSMHRTSTRLEEVLVDCSGEIGT
ERTPETAFVNKKHALLQLMEQSPVSKTIVFCNKIETCRKVENVLKRFDRKGAYVRVLPFH
AALAQDSRVANMKEFMNYSSGGCSLFLVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRR
VGRTARGAVGKGKAFIFVVGKQVSLAQKIIDRNRKGHPLHDVPSAYELMS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccatagctcctcctcatcctctttcaagcttcaggcttcaaatcaccgattcc
cacagccaaagccacaggggtgtcgtctttgattatgtatcgaaaagcggtgcaaaacct
tttgctttggttagagcagcatgtagttcgacccgcttgaacactccatttcagtctgtt
actgagctcgctgatggtggcggcgtttgctcccattctccgaacaaggaggacgaagat
gctacttcaggcattgcaaatccaggcgctgtcacaaaaactgcgaatccaacagcaggt
agtaagagattgtctggaaatttcagaaaactcaaagcacagaaggtcaaattcctcatg
atgaagcaaaaggtaaggaaacatgcagatgtatcagcagcggcagatgcagattttgat
acattggtcacctcatatgctaaatcagattctacagacaagtcttgcggggatgaaatg
gctaccaggagaggagagaaaatgaaggtttccagttccaataagaaacttagtgaatat
cagactttggattatgaaattatgccagataaacctgtaaaatctattcccagaagagct
ggaacagttcatgctggttcttcttcttaccgaagaggatggggtaatgttggtctcgag
tcccaatcagcaaatcctctacaaagaaagcacaagttttctgctcagaatgacttcttt
agtagaaaatcattcagagatttgggatgtagtcaatttatgatggaatctttaaagcaa
caatctttccttcgcccttcaaatattcaggccatggcatttacacctgtaattgagggg
aaatgctgtgttatagcagatcaaagtggatcaggaaagacattggcatatcttatacct
gtaattcagcgtctcaggttagaagaactccaaggacttggtgaatccttatcacagaat
cctcgagtacttataatggtgccaacggctgagctggcttctcaggttttgaataattgc
cgatcaatgtcaaaatttggggttccatttcggtctatggctgcaactgggggattctct
cagaggactcaattgcaaaatctagaacaaggtgttgacattctaatagtcacacctggt
cgtttcttgttcctaattaaggaaggattcttgaagttgacaaatctgaaatgttctgtg
ttggatgaggtagacatattgttcaaagatgatgactttgagtttgcactccaaagcttg
atgaattcttcacctcttgccacacaatatctgttcgtgactgctactttaccggtagat
gtgtataacaagcttattgaaatctttcctgattgtgaaatgatcatgggacccagtatg
catcgcacgagtaccagactggaagaggttcttgttgattgcagtggagaaattgggaca
gagcggactccagagacagcattcgttaataagaaacatgctcttctgcagcttatggag
caaagtcccgtctccaaaacaattgttttctgtaacaagattgagacatgcagaaaagta
gagaatgtgttaaaacgttttgatagaaaaggagcctatgttcgggttctaccattccat
gctgctctggcacaagattcaagggttgcaaacatgaaagagttcatgaattatagttct
ggaggatgctcattatttttggtttgcactgatagagcatcgcgaggaattgattttact
ggtgtggatcatgttatactctttgactttccacgtgatccaagtgaatacgtgcgtcgt
gttggaagaacagctagaggtgctgtgggaaagggcaaggcgtttatctttgtggttggt
aagcaagtttctctcgcacagaagataattgacagaaaccgaaaaggtcacccattgcat
gatgtgccatctgcatatgagcttatgagttaa
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