Jatropha curcas (Barbados nut): 105644153
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Entry
105644153 CDS
T03922
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105644153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105644153
Enzymes [BR:
jcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105644153
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105644153
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
105644153
NCBI-ProteinID:
XP_012084820
LinkDB
All DBs
Position
Unknown
AA seq
622 aa
AA seq
DB search
MVSFPHWLQRRLFSTHLPKNHQTNSQWNVKQVTKSNFTNSLEEVKSHISTSDFIAVSLQK
TGSFSSPWHRVSPFDTADTAYLKAKHVAERFQVLQFAVCPFTVRASKITAYPYNFHLFPR
DELNIGMPSYSFSCQTSYLTSMAREGFDFNACIYDGISYLSKAQESAAEVQMGNPILANR
ILESTSISSAADEFFIQRTKSRVKHWRNACTDSGTKADEGLLKSLRKLVLGTEEHNSRPC
MNIDVCSERQVQLVIEMLQEFSDDLVPLIVPAKGGGTQAIRVVLARSKEDRDLLQNELQN
LKEEHNKKVRGFREVIDLISSSQKPVVSHNSLNDLTFIYSKFLAPLPANIEEFMHSLHLA
FPQVIDVNHLMREISPLKKLTNIPMAISYLKNRFFAPVDVEVPFEALVNEGKTHGRNVVR
ICQLFAKLCYVLKLAPNSIQSDDKNLPSALEAYSNIFTPYTPGPQEPTDEDIRIWTNSTR
KVSCEDLVFLWGFRDGMSAGLLKSLLQESHKIFSEEFDVKLVDKSCAIVVFWQRGMSKTF
LDVLNNSPEIFGPLREMISEGARAASYDTYYKGCRLALWDANLADSLDKALADRDSSSEA
DSKTKSLDTYWCSEWMINLDDL
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggtttctttccctcactggcttcaaagacgcctcttctccactcatctcccaaaaaac
caccaaactaacagccaatggaacgtcaagcaagtaaccaagtccaatttcactaactct
cttgaagaagttaaatctcacatctctacctctgatttcatagccgtctccttgcagaag
accggctccttctcttctccatggcaccgcgtttcccctttcgacaccgccgacactgct
tacttgaaagcgaaacacgtcgccgaacgcttccaggttcttcagttcgctgtttgcccc
ttcactgtcagggcatccaagatcactgcttatccgtacaactttcacttgttccctaga
gacgaattaaatatagggatgccatcttatagtttttcttgtcaaacttcttatttgact
tccatggctcgagaaggttttgattttaatgcttgtatatatgatggcatatcatatttg
tctaaagcacaagaatctgcagcggaagtccagatggggaatccaatactggctaataga
attctggaatctacttctatctcttctgcggctgatgaatttttcattcaaagaactaaa
tcacgtgttaagcactggagaaatgcatgtacagattccggtaccaaggctgatgagggt
ttgttgaaatccttgaggaaactcgtactaggaactgaagagcataattcaagaccatgc
atgaatattgatgtttgcagtgaacgccaagtgcaactagtgattgagatgttgcaagaa
ttctctgatgatcttgtccctctaatagttccagccaagggtggaggtacccaagcaatc
cgtgttgtcttagcacgttcaaaggaagacagggatcttcttcagaatgagctacaaaac
cttaaagaggaacataacaagaaagttcgtggctttcgtgaggtgatcgatttgatttct
tcttcacagaagcctgttgtctcccacaattcccttaatgatttgacattcatctattct
aaattccttgctcccctaccagctaacattgaagagttcatgcattccttgcacttagct
ttccctcaggtaattgatgtcaatcatctgatgagggaaattagccctctgaaaaaattg
acaaatatacctatggctatatcttacttgaagaatcggttctttgcaccagttgatgtg
gaagttccgtttgaagctttggtaaatgaaggcaagactcatgggcgtaatgttgtgagg
atttgccaattgtttgcgaagctatgctatgtactcaaacttgctccgaattctatccaa
tctgatgacaaaaatctaccttcagcccttgaagcttattcaaatatattcactccatac
acccctggcccccaagaaccaactgatgaggacatcagaatttggactaacagcacaaga
aaagtaagctgtgaggacttggttttcttgtggggatttagggatgggatgtcagcaggg
ctactgaagagcctgcttcaagagtctcataaaattttttccgaggaatttgatgttaaa
ttagtagacaagagctgtgccattgtggttttctggcaacggggtatgtctaaaactttt
ctagatgtcctgaataatagtccagagatttttggacctttaagggagatgatctcagaa
ggtgcaagagctgcaagttatgatacctactacaaaggttgcagattggctttatgggat
gctaatttagcagattcattagacaaagccttggcagatcgtgactcttcttcagaagct
gattctaaaacgaagtctttagacacttattggtgcagtgaatggatgattaacctggat
gatctttaa
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