KEGG   Jatropha curcas (Barbados nut): 105644417
Entry
105644417         CDS       T03922                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03018  RNA degradation
jcu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105644417
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105644417
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105644417
   03041 Spliceosome [BR:jcu03041]
    105644417
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105644417
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     105644417
Spliceosome [BR:jcu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    105644417
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 105644417
NCBI-ProteinID: XP_012085150
UniProt: A0A067K3M3
LinkDB
Position
Unknown
AA seq 94 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR
RITKLDQGGGLPSLIRYCKMEINLHSDKLKHLMN
NT seq 285 nt   +upstreamnt  +downstreamnt
atggccaacaatccttctcagctcctcccgtctgagttaatagacaggtgcataggctcg
aaaatatgggtaataatgaaaggagacaaggagctcgttggaactcttagaggcttcgac
gtctatgtcaacatggtccttgaagacgttactgaatatgaaatcacaagcgaagggcgg
cggattaccaagcttgatcagggcggcggattaccaagcttgatcagatactgtaaaatg
gaaataaacttgcacagtgataagttaaagcatctgatgaattaa

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