Jatropha curcas (Barbados nut): 105644861
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Entry
105644861 CDS
T03922
Name
(RefSeq) uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105644861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105644861
Enzymes [BR:
jcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105644861
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105644861
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CRS1_YhbY
Motif
Other DBs
NCBI-GeneID:
105644861
NCBI-ProteinID:
XP_020539014
LinkDB
All DBs
Position
Unknown
AA seq
467 aa
AA seq
DB search
MVVKRVLASTASVALTKCLQLKNLSSNPLLMVYFFPKSLHHKTSLIDVICKASAQAPALG
PFCHIKGPPLVGHLGIHTGSTLNDVHKDGLPPTDCGKSTIVDDSGGAKVKRKKLKGKRAV
VRWLKFFRWKKKKEYERMTTEEKLLYKLKKARKKEERLVQALKKIEPAESSETTHDPEIL
TPEEHFFFLKMGLKCKNYVPVGRRGIYQGLILNMHLHWKKHQTLQVVVKTFSPEEVKEIA
AELARLTGGIVLDIHEENTIIMYRGKNYTQPPTEIMSPRITLPRKKALDKSKYRDGLRAV
RKYIPRLEQDLELLQAQEARGKLETTSVEETVKTEFSGRKSGSISNIPFENSEKLEEIID
RQEKCSEDESPMDLGMSSDSEDLSDIFETDSETETQDKSRRPLYLDEFEKFPVEGNGEPK
DFEDHLRQLSQDSKWATESEKDLQSPTFDEVDRMFLRAASLLKRKKR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggtggtaaagagggttttagcatctacagcatcagtggcactcaccaaatgtctccag
cttaagaatttgtcatctaatcctttgctaatggtttatttctttcctaagtcacttcat
cataaaaccagtttgattgatgttatatgcaaggcttctgctcaggcacctgcccttgga
ccattctgtcatattaaagggcctcctctagtgggacatctagggatacacactggttca
actttgaatgatgttcacaaagatgggttgccaccaactgattgtgggaaaagcacaatt
gttgatgattctggtggtgctaaagtgaagaggaagaagttgaaaggaaaacgagctgtt
gtaaggtggctaaagttcttcaggtggaaaaagaagaaagagtatgaaagaatgacaaca
gaagagaaactattgtacaagttgaaaaaggctcgaaaaaaagaggaaaggcttgttcaa
gctttgaaaaagattgagcctgcagaatcatcagaaacaactcatgatccagagatattg
accccagaagagcatttcttctttttaaagatgggcctcaagtgtaagaattacgtccca
gttggaagacgaggaatataccagggtttaatccttaacatgcacttgcactggaagaaa
catcaaactctgcaggtggttgtgaagacattctcaccagaggaggtcaaggagattgct
gctgagctagcacgattgactggagggattgtgctagatattcatgaagagaacacaata
atcatgtacagagggaagaattatacgcagccaccaacagaaataatgtcacctaggatc
actcttcccagaaagaaggctttggataaatcaaagtacagggatggccttagggctgtc
aggaaatatatccctcgacttgaacaggatcttgaattgcttcaagcacaagaagctagg
ggcaaacttgaaactacttcagttgaagaaactgtgaagaccgagtttagcggtagaaaa
tctgggagcatttcaaacattccatttgagaattcagaaaaattggaagaaattatagac
aggcaagagaaatgctctgaggacgaatctcctatggatcttggaatgtcatcagattca
gaagatctatcagatatttttgagactgactctgaaaccgagactcaggataaatcaaga
cgccctctttatttggatgagtttgaaaagttcccagttgaaggtaatggagaacctaaa
gattttgaggatcatttgcgccaactatctcaggactcaaaatgggccacagaatctgag
aaagacttgcagtcacctaccttcgatgaggttgaccgtatgtttcttcgtgctgcttct
cttttgaagaggaagaagagatag
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