Jatropha curcas (Barbados nut): 105645054
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Entry
105645054 CDS
T03922
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105645054
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
jcu03041
]
105645054
Spliceosome [BR:
jcu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
105645054
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
EIF3I
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_Aladin
ANAPC4_WD40
PRP4
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_SCAP
eIF2A
WD40_like
Tricorn_2nd
Motif
Other DBs
NCBI-GeneID:
105645054
NCBI-ProteinID:
XP_012085943
LinkDB
All DBs
Position
Unknown
AA seq
567 aa
AA seq
DB search
MTAEEESPLPAATLPEESSTAVAVDNQTLIPQLPPIIPPVVQSFIPPIAPIPPVPPPSIP
RPLAPLPIRPPVLRPPNGEAKMSDSDSDHDDSGPTGTAHGSIGDYLISEESRVERERQQK
MIQDMMMRRRAAALAVPTNDMAVRTRLRRLGEPITLFGEREMERRDRLRMLMAKLDAEGQ
LEKLMKAHEEEEAATAGIQEDEDDMIQYPFYTEGSKELLDARIDIARYSIQKAALRLQRA
RRKRDDPDEDVDAEIDWALRQAGGLVLDCSEIGDDRPLSGCSFSSDGKLLATCALSGVAK
IWSMPQVNKVSTLKGHTERATDITFSPVENHVATASADRTAKLWNTDGSVLQTFKGHLDR
LARIAFHPSGKYLGTTSFDKTWRLWDVDTGVELLLQEGHSRSVYGIAFHHDGSLAGSCGL
DALARVWDLRTGRSILALEGHVKPVLGINFSPNGYHLATGGEDNTCRIWDLRKKKSLYII
PAHANLISQVKFEPQEGYYLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSLDVGSDGG
YIATVSHDRTIKLWSSTNNEKEAMDVD
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacagcagaagaagaaagtccgttaccggcggcaactttaccagaagaatcatcaact
gcagtagctgtcgataatcaaaccttaattccacaactccctccaataatccctccagta
gtccaatcatttatccctccaattgctccaatacctccggttcctcccccttcaatccct
cgcccattagcccctcttccaatccggccacctgtgcttcggccgccaaatggtgaagcc
aaaatgagtgactcagattccgatcacgatgactcggggcctactggaactgctcatgga
tcaataggagattatctaatttctgaggaaagcagagtagaaagagagcggcaacagaag
atgattcaggatatgatgatgaggcggcgtgcggctgctctcgcggtacctactaatgat
atggcggttaggactcggcttcggaggttgggagagccgataacactctttggggaaagg
gagatggagagaagggataggttaagaatgttaatggccaaactggatgcagaaggacaa
ttggagaaactaatgaaagctcatgaagaagaggaggctgctactgctggcatacaagaa
gatgaggatgatatgattcagtatccattttataccgagggttctaaagagctattggat
gctagaattgatattgctagatattctattcagaaagctgcattgcggcttcaacgtgct
agaaggaaaagggatgatccagatgaagatgtagatgctgaaattgattgggctttgagg
caggctgggggtctggttcttgactgtagtgaaattggagatgatcggccactttctggt
tgttctttctccagtgatggaaaacttcttgccacatgtgctttaagtggagttgctaaa
atatggagcatgcctcaagtaaacaaggtttctaccttgaaaggacacacggagcgtgca
acagatattacattttctcctgtggaaaaccatgtggcaactgcttcagctgatcgaact
gccaagttgtggaacactgatggttctgtccttcagacatttaagggccatctggatcgt
cttgcacgcatagctttccatccatcagggaagtacttgggcactacaagctttgacaag
acgtggagactatgggatgtagatactggtgtggagttgcttcttcaagagggtcacagt
cggagtgtctatgggatagccttccatcatgatggttctttagcaggatcttgtggactg
gatgcacttgcacgtgtttgggaccttcgtactgggagaagtattctggctttggaaggt
catgtcaagccggttcttggtatcaatttttcacccaatgggtatcatttggccactggt
ggtgaagataatacttgtcgaatatgggatttgaggaagaaaaaatctttgtatatcata
ccggctcatgcaaatcttatatcacaagtgaagtttgagcctcaggagggctactacctg
gtcactgcatcttatgacatgactgccaaggtttggtcaggtcgagatttcaaacctgtc
aagacattatcagggcatgaagcaaaagtaacttctctggatgttggttcagatgggggc
tatattgcaactgtatcgcatgatcgaaccatcaagctttggtccagcactaacaatgag
aaggaggctatggatgtagactaa
DBGET
integrated database retrieval system
