KEGG   Jatropha curcas (Barbados nut): 105645225
Entry
105645225         CDS       T03922                                 
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
jcu  Jatropha curcas (Barbados nut)
Pathway
jcu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:jcu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105645225
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:jcu03019]
    105645225
Messenger RNA biogenesis [BR:jcu03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     105645225
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 105645225
NCBI-ProteinID: XP_012086156
UniProt: A0A067JQ87
LinkDB
Position
Unknown
AA seq 305 aa
MGLPNVSGDLSSEMEVDAFRRLFPLRYYERHLAESIRPDARPLGSARDTTLALGAVASAD
GSALAKIGSTTMLAAIKMEVMTPSTDSPDEGCIAIDFHMPPICSPLVRPGRPAEAAPVVA
KQLSDTILSSGMINLKELSLVSGKAAWMAYLDIYCLDADGALFDAALFSVVAAFSHLQIP
IVSLNDDGKIVVLSEEDEIGRSEKKPVNQEKRKLTLSSLPFSLTFILHKNYILADPTAEE
ESIMETLVTVVLDSSARLVSFYKPGGPVLAYTSAVQDCVALTRQRVKELQGILDEAISGM
EIDRV
NT seq 918 nt   +upstreamnt  +downstreamnt
atggggttgccaaatgtctctggagatttatcatcagagatggaggttgatgcttttaga
cgccttttccctcttcgttattatgagcgtcatcttgcagagtctattcgtcctgatgca
aggccactcgggagtgctagagacacaacactagctcttggggctgttgcttctgctgat
gggtcagctttggctaagattggttcaactactatgttggctgccataaaaatggaagtg
atgaccccttccacagactcaccagatgagggttgcatagctattgatttccacatgcct
ccaatttgttctccacttgttaggcctggtaggcccgctgaggcagcaccagttgtggca
aagcagttatctgatacaatattaagttctggcatgattaatttaaaggaactatctctg
gttagtggaaaagctgcatggatggcatacctggatatctattgtttggatgctgatggt
gctctttttgatgctgcattgttttcagtagttgccgccttctcccatttgcaaataccc
atagtttcactgaatgatgatggaaagatagtagttttgtctgaggaagatgagatagga
aggtcagaaaagaagccagtcaatcaggagaagaggaagctgacactgagtagcctgcca
ttctcattaacattcatacttcacaagaactacatcttggcagaccccactgcagaggaa
gaatctatcatggaaactcttgtaacagtagttttagattcatctgctagacttgtttcc
ttttacaagccaggtggaccagttcttgcctatacatcagctgtccaggattgtgtagca
ttaacaaggcaaagagtgaaggaacttcaagggattttagatgaggccatttctggtatg
gagattgaccgagtttaa

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