Jatropha curcas (Barbados nut): 105645304
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Entry
105645304 CDS
T03922
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105645304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105645304
Enzymes [BR:
jcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105645304
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105645304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DUF2439
Motif
Other DBs
NCBI-GeneID:
105645304
NCBI-ProteinID:
XP_012086261
UniProt:
A0A067K130
LinkDB
All DBs
Position
Unknown
AA seq
706 aa
AA seq
DB search
MSKQWPLRALSRALSRVYSSSSSSSSFPLKHVTKSNFESALAKLKSHVGAADFIAIDLEM
TGITSAPWRESLEYDRFDVRYLKAKDSAEKFAIVQFGVCPFRWDSHRHSFIAHPHNFFIF
PRQELATDGPSYEFLCQTTSMDFLAKYQFDFNACIYEGVSYLSRGQEEEALRRLYSRYES
DGMLDNLNDVRDLPLASVTNILFSERMTKRLREWRDGLLREGNGGFQFQGSFNNSRQQLQ
TIFYKMRPALCLSGFTSHQLKLIQMVVKKHFKDLAYVHVNVESSCLQQLVVCTESEDDKD
LLMKQVKDECREKAEMKIKDAVGFRHVIDLLSSAQKLIVGHNCFLDIAHIYSKFFGPLPL
TAEEFVASVNKHFPHIVDTKILLNANDVLLRRMKKSRTSLSSAFRLLCPEIALGSNDSSD
IAFDRQVNVEVQVDDTRFSKLSSGVKHEAGYDAFMTGCVFAQACSHLGIDFDLQLSSDNL
AHNEKLQKHVNLLYLSWFNGDIINLRTGNRIAESLVTNNIKKRHTKILFENIVLIWRFPS
TLKASEIRECICKVFGQNSVTSIYKVDETAVLVQFSKSELVSDFLVLKEELDRSNDVISV
FHPLSKLLEGGNTCAAEYETYKEICSSPFSKVLFADQAAAVGIGSQTKLVESKVVAQSQE
QETAVKKSKAVKQRVIDDLLSGQSSCTEVIDSFYIGQVKQIGATNL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagcaatggcccttaagagccctctcacgtgctctctcacgtgtatactcctcc
tcttcatcgtcttcttcatttcctctgaaacatgtaaccaagtcgaacttcgagtccgca
ctggccaaactcaaaagccatgtcggagccgcggatttcatagccatcgatctggaaatg
accggaatcaccagtgctccatggcgcgagtccttagaatacgaccgattcgacgttcgg
tacctcaaggctaaagattccgctgagaaattcgccattgttcagttcggcgtctgtcct
ttccgatgggactctcaccgccactcgtttattgctcacccgcacaatttcttcatattt
cctcgccaagagctagcaactgatggcccatcttatgagttcctctgccagaccacgtct
atggatttcttagctaaatatcaattcgatttcaatgcttgcatatatgaaggagtgtct
tatttatccagaggacaggaagaggaagcactaagacgcttgtattcgcgatatgagagt
gatggaatgttagataacctgaatgacgttagagacttgccattggccagtgtgactaat
attcttttcagtgaacgaatgacgaaaagattgagagaatggcgtgatgggttattgagg
gaaggaaatggaggatttcagttccaaggcagcttcaataactccaggcaacagctccaa
accattttctacaagatgcgtccggctctttgtctgagtggtttcacgtcccatcaactc
aagttgattcagatggtcgttaagaagcattttaaagatcttgcttatgttcatgtcaac
gttgaaagttcttgtttgcagcagctagttgtatgtactgaatctgaagatgacaaggac
ttgcttatgaaacaagtgaaggatgaatgtcgtgaaaaggcagagatgaagatcaaagat
gcagttgggttccgtcatgttattgaccttctttcttctgcacagaagttgattgttggt
cacaattgcttcttggatattgcacacatatacagtaaattctttggtcctcttcctctg
actgctgaagaatttgttgcctctgttaacaagcacttcccacacattgttgataccaaa
atactcttaaatgctaatgatgtgctcctccgaaggatgaagaaatcaaggacgtcgctt
tcatcagcctttcgtttactctgtccagaaatcgctctgggttctaatgatagttctgat
atagcttttgatcgacaagtgaatgtggaggttcaagtggatgacacgagattttccaag
ttgagttctggagtcaagcatgaagccggatatgatgcttttatgacagggtgtgtcttt
gctcaggcatgcagccatctaggtattgattttgatctccagttgtcctctgataatctg
gcccataatgaaaaactccaaaagcacgtcaacctcctatacctcagttggtttaatggg
gacattattaatttaagaactgggaacaggattgctgaatctttggtaactaataacatc
aaaaagaggcacaccaagattttgtttgagaacattgttttaatctggcgatttccatct
acactcaaggcaagtgagataagagaatgcatctgtaaagtctttggtcaaaactctgtt
acttccatatataaagtggatgaaactgcagttttagttcagttcagcaagtcagagttg
gtctctgattttctagttttgaaagaagaattagacagaagtaatgatgttatctctgtt
ttccatcccttatcaaaactactagaaggtggaaatacatgtgccgctgaatatgaaacc
tataaagagatctgcagttcacctttttccaaggttctctttgcagatcaggcagcggca
gttggtatcggatcgcagaccaagttggttgaatccaaagtggtggcacaatcccaagag
caagaaactgctgtaaaaaaaagcaaggcagtcaagcaacgtgtaatagatgatctgttg
agtggtcagtcatcatgtaccgaggttattgattctttttacatcggacaggtcaaacag
ataggagctactaatttgtga
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