Jatropha curcas (Barbados nut): 105645327
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Entry
105645327 CDS
T03922
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105645327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105645327
03012 Translation factors [BR:
jcu03012
]
105645327
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105645327
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
105645327
Translation factors [BR:
jcu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
105645327
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
R3H
DEAD
Helicase_C
HA2_C
HA2_N
ATPase
Ank_2
Ank_5
AAA_22
nSTAND3
ResIII
AAA_19
AAA_23
Rad17
AAA_7
AAA_16
ABC_tran
AAA_25
Motif
Other DBs
NCBI-GeneID:
105645327
NCBI-ProteinID:
XP_012086291
UniProt:
A0A067JPZ5
LinkDB
All DBs
Position
Unknown
AA seq
1219 aa
AA seq
DB search
MGKKRQKKAEQQQNPNVAEATRIRISQILDHFRATKEQVYTFEANLSNRERALVHQVCRK
MGMKSKSYGRGDQRRVSVYKTTRKFDPANAKESLTYVTFSEESKILLQELFMNYPPEDGE
LGAKVFGNYNGKDSKIQGKKDDIFSMPSMTKEDIVKKVESLNSRIEKAAKLRQIVEARSK
LPIASFRDVITSNIESHQVVLISGETGCGKTTQVPQFLLDHIWGKGEACKIVCTQPRRIS
ATSVAERISSERGQSVGDDVGYKIRLESKGGRNSSIVFCTNGVLLRVLVSKGASRSKKEA
SNKMTKDDVSNITHIIVDEIHERDRYSDFILAIIRDILPSHPHLRLILMSATLDAARFSQ
YFGGCPIIRVPGFTYPVKTFYLEDVLSIIKSPDDNHIDSAMPGVPNKSPELTEEDKAALD
EAINLAWTNDEFDPLLDLVSSETNPNVYNYLDSLLGLTPLMVFAGKGRVVDVCMLLSFGV
NCHLQDKDGLTAMDWAKQENQQETAEVIKRHVESALTDSLKQQQLLDKYLEKINPELIDV
VLIEQLLRKICIDSKDGAILIFLPGWDGINKTRERLLANPFFKDSSKFVIISLHSMVPTM
EQKKVFKRPPQGCRKIILSTNIAESAITIDDVVYVIDSGRMKEKSYDPYQNVSTLHSNWV
SKASARQREGRAGRCQPGICYHLYSKLRAASLPDFQVPEIKRMPIEELCLQVKLLDPNYK
IEDFLRKTLDPPVPETIHNAITVLQDIGALSLDEQLTELGEKLGCLPVHPLTSKMLFFAI
LMNCLDPALTLACASDYRDPFTLPVLPNEKKRAIAAKFEIASLYGGYSDQLAVIAAFECW
KNAKARGQELQFCSQYFISPGIMNMLDGMRKQLQAELIRNGFIEDGVSCCNLNAHDQGIL
HSVLVAGLYPMVGRFLPPKNGKRFHIETAVGGAKVRLHPHSLNYNKLTFKKADDCPLIVY
DEITRGDGGMHIRNCTIVGPLPLLLLATEIVVAPSKNENEEDDDDDDDGSDTAVEDESDE
DLMEVDEKSGGHNDKKIMSSPDNSVTTVVDRWLYFRSTALDVAQIYCLRERLSAAILFKV
THPRKTLPPALEASMYAIASVLSYDGLSGIPLPLESVDSLTSMVYATGIDNSPGRREAMN
QGPSNFLKSLMSHGARQPAPGYHIAKLPAFKGKSNGNESSSYDQRPPLHAPTSVGYNLDS
HGSRSRWAKRQRAKASKKQ
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagaagagacagaagaaagcagaacaacaacaaaaccctaatgtggctgaagct
actcgtattcgaatttcccaaatacttgatcatttccgggctactaaagagcaagtttat
acatttgaagctaacttgtccaatcgtgaacgtgctttggtgcatcaagtatgcaggaaa
atgggtatgaaatccaagagttatgggcgtggggatcaacgacgcgtatctgtttacaag
actactaggaagtttgaccccgcgaatgcaaaggaaagtctcacgtatgtgacattttca
gaagaatcaaaaattctcttgcaagaattattcatgaactacccacctgaggatggagag
cttggtgcaaaagtatttggaaattataatggaaaggatagtaaaatacagggaaagaaa
gatgatatctttagtatgccttcaatgaccaaagaggatatagtgaagaaggtggaatca
ctaaattctagaatagaaaaggctgcaaagttgagacagattgttgaagcaagatctaag
cttccaattgcatcctttagggatgtcattacttccaatatagagtctcaccaggttgtt
ctcatttctggtgagactgggtgtggaaagactacacaggttccacaatttctattggac
catatatgggggaaaggtgaagcctgtaaaatagtctgcacacaacctcgtcgtatctcg
gcaacttcagttgctgaaagaatctctagtgaaagaggacaaagtgttggagatgatgtt
gggtacaagattcggcttgaaagtaaaggtggaagaaactcatcaatagtgttctgcaca
aatggggttctgctgagggtgttggtttccaagggtgctagtaggtcaaaaaaggaagct
tccaataaaatgaccaaggatgatgtttctaacatcactcacattattgtggatgaaatt
catgaaagggatcgctactctgattttatattggcaataatcagagacatccttccttca
catcctcatcttcggctgatattgatgagtgctactcttgatgctgcacgattttcccaa
tattttggtggctgcccaattattcgtgttcctgggttcacttatcctgtcaaaactttc
tacttggaggatgtactttctatcattaaatctccagatgacaatcatattgattctgct
atgccaggcgtcccaaataaaagccctgagctaacagaggaagacaaagctgctttagat
gaagctatcaatttggcttggacaaatgatgaatttgatcccctattggatttggtttct
tctgaaacgaaccctaatgtttataattacctagattccttacttggattgactccattg
atggtctttgctggaaagggtagagtggttgatgtttgcatgcttctgtcttttggtgtg
aattgtcatttacaggacaaggatgggctaacggcaatggactgggcaaaacaagaaaac
cagcaagaaactgctgaagtaataaaaagacatgttgaaagtgccttgaccgactccctc
aagcagcaacaactacttgataaatatctggaaaaaattaaccctgaactcattgatgtt
gttcttatagaacagttgttaaggaaaatatgcattgattcgaaagatggtgctatcctc
attttccttcccggatgggatggtataaataagactagggagaggttactagcaaatcca
tttttcaaagactcttctaagtttgttataatttctctccattctatggtcccaaccatg
gagcaaaagaaagttttcaagcgcccacctcagggttgccggaaaatcattctttcaact
aatattgcggaaagtgcaattaccattgatgatgttgtctatgtcatagatagtggtcga
atgaaagaaaaaagttatgatccttatcagaatgtatcaactcttcattctaactgggtg
tcgaaagcaagtgcaaggcagcgcgaaggacgtgcaggccgctgtcagcctgggatatgc
tatcatctttattcaaaactccgagcagcttctttgccagatttccaagttcctgaaatt
aagagaatgccaattgaggaactttgtttgcaagtgaagttacttgatcccaattacaag
atagaagatttcttgcggaagactctggaccctccagttccagagaccattcataatgca
attactgttcttcaggatattggagctttatcattagacgaacaactgacagaactagga
gagaagctaggctgcctacctgttcatccattgacaagcaagatgcttttctttgcaata
ttgatgaattgccttgatccagctttgacattggcatgtgcctctgactatagagatcca
tttacccttcctgtgttgccaaatgaaaagaagagagctattgcagctaaatttgagatt
gcttcactgtatggtggctacagtgatcaactagcagttatagcagcctttgagtgttgg
aaaaatgctaaagcaaggggtcaagaactgcagttttgttctcaatactttatatctcct
ggtatcatgaatatgctggatggtatgcgtaaacagcttcaggcagaactaatccgtaat
gggttcattgaggatggtgtctcatgttgtaatctgaatgcgcatgaccaaggaatactc
cattctgtccttgttgctggtttgtatcctatggtagggagattccttccgcccaaaaat
gggaaacgtttccacatagaaactgcagttggtggtgctaaagtcaggttgcatcctcat
tctcttaattataataaattaacatttaaaaaagctgatgactgccctttgattgtgtat
gatgagataactcgaggggatgggggcatgcacataaggaactgtactattgttgggcca
cttccattgttactgcttgcaacagagattgtagttgctccctcaaagaatgaaaatgag
gaagatgatgatgatgatgatgatggaagtgatactgcagttgaagatgaaagtgatgag
gatttgatggaagtagatgaaaaatcgggtggacacaatgacaagaagatcatgtcatct
cctgataattcagttacaacagttgttgatcggtggctttatttcagatcaacagccctt
gatgttgctcagatttattgcttgagagaacgattatcagcagcaatcttattcaaagtg
acccatccaaggaaaacacttcctccagctctagaggcttcaatgtatgcaattgcttct
gttctgtcttatgatgggctatctggaatcccattacctttggaatctgtagactcgttg
acatcaatggtctatgcaactggaattgacaactctccagggagaagagaggcgatgaac
cagggcccaagtaatttccttaaatcactaatgagccatggcgcacggcagcctgctcct
ggttatcatatagccaaattacctgcattcaaggggaagtcaaatggaaatgaatcatca
agctatgatcaaagacctccattgcatgctcctacttcagttgggtacaatttggatagc
cacggttcaagatcaaggtgggctaagcgacagcgtgctaaagcatccaagaagcaatag
DBGET
integrated database retrieval system
