Jatropha curcas (Barbados nut): 105646209
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Entry
105646209 CDS
T03922
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03013
Nucleocytoplasmic transport
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105646209
03015 mRNA surveillance pathway
105646209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105646209
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105646209
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
105646209
NCBI-ProteinID:
XP_012087411
UniProt:
A0A067JMI8
LinkDB
All DBs
Position
Unknown
AA seq
418 aa
AA seq
DB search
MAKPTRGRPSPPSGSGSGSSSRSRSRSRSRSYSGSDSRSSSRSRSLSSRSRSRSRSKSLS
SSSSPSHSLSSGSRSPPPQKKSPTEVAKRGRSPPPQSKKASPPARKISPIRESLVLHVDS
LSRNVNEGHLKEIFSNFGEVVHVELAMDRTVNLPKGYGYVEFKTRADAQKALLYMDGAQI
DGNVVRARFTLPPRQKVSPPAKPIVAPPKRDASKTDNDVEKDGPKRIRESSPHRKPLASP
RRRSPPVRRGGSPRRLPDSPPRRRADSPPRRRVESPYRRGDTPPRRRPASPVRGRSPSPL
RRYRSPARGSPRRIRGSPVRRRSPPPPRRRTPPRRARSPPRRSPLRRRSRSPIRRPARSR
SRSLSPRRGRAPVARRGRSSTYSGSPSPRKVTRRSRSPRRRGRSTSNSSSSSSPPRKP
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaacgcgaggccgcccctcgccgccctccggctcgggctcgggctcgtct
tcccgatcacggtccaggtcacggtcacgctcgtattccggttcggattctcggtccagc
tctcgctcgcggtccttgtcctcccgctcacgttctcgatctcgctccaaatccctctct
tcatcctcctctccttctcacagcctcagctccggtagccgtagcccgcctcctcagaag
aagagtcctactgaagtagctaagcgaggacgttctccaccaccacaatctaaaaaggct
tctccacctgcaaggaagatttctccgattcgtgagtctctcgttctccatgttgactca
ctcagccggaatgtgaatgaaggccatttgaaagaaatatttagtaactttggtgaagtt
gtacacgtggagctggcaatggaccgtactgttaatcttccgaaaggatatggatatgtt
gagtttaagacacgtgccgatgctcaaaaggcccttttatacatggacggggcccagatt
gatggcaatgttgttcgagcaaggttcacattaccaccacgacagaaggtttcacctccc
gcaaagcccattgtggctcctccgaagagagatgcttccaaaactgataatgatgtggag
aaggatggaccaaaaagaataagagaatcttctccccatcgtaagccactagcctcgcct
cgaagaagatcccctcctgttcgaagaggtggatctccaagacggcttccagattctcct
ccgcgtcgacgtgcagattcacctccgcgtagacgagtagaatctccttatcgtcgaggg
gatacacctccaaggcggagaccagcatccccagttagaggccgttcgccatctccacta
aggcgttatagatcccctgcaaggggctctcctagaagaatacgtggtagtcctgtccgt
agacgttctccccctcctccaaggcgacgtactcctccaagacgagcccgtagtcctccc
agaaggtctccacttcgtcgacgtagccgctctcctattcgtcggcctgcacgctcgcgt
tcaaggtcactctcaccgaggagaggccgagcacctgtagcaagacgtgggaggtcatca
acctattctggatcacctagtccacgcaaggtcactcgcaggagccgcagtcctagaagg
agaggaagaagcaccagtaacagcagcagcagcagttcgccacctcgtaagccatag
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