Jatropha curcas (Barbados nut): 105646588
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Entry
105646588 CDS
T03922
Name
(RefSeq) uncharacterized protein LOC105646588 isoform X2
KO
K06100
symplekin
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105646588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105646588
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105646588
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105646588
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
105646588
U7-dependent histone pre-mRNA processing factors
105646588
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
105646588
NCBI-ProteinID:
XP_012087848
LinkDB
All DBs
Position
Unknown
AA seq
1333 aa
AA seq
DB search
MVGMVNSSSRERLASLVKAAIDIPLKLETLRLLNENLLEEKDVGSLSEFLPRLFELQYDQ
HSPVRKSVAQIIGEIGLKHLEFVPEIAPVLMSVLDDRAPAVARQAVTCGINLFRSTFQKL
AIQGLYASEVDDLLKSSWSSMLEFKEKLYSIAFQPGSGGVRLLALKFVEAVILLYTPDPN
GPAEPPTHEEELVEFNISWLRGGHPVLNVGDLSIEASKRLGLLLDQLRFPTVKSLNNLVI
IVLINSLATIAKRRPPYYGRILPVLLGLGPSGSSIEVMHASGANLALKNAFLTCLKCTHP
GAAPWRDRLAGSLKEMKAGGLAEEALCQNFKSNGGAEEGEEVSTIAMDDKLKTEPFDGIH
EKFGSKRPGGEDNSESAEDNDVPKKRARQMASVSEDSTKELNRNISVSQDDISSDGPAVT
KGEDDTGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVIANMRYLPSSHPEA
EGQDKPLVDMTIVGSNTQAKYPSSFLANVLSLSTSFPPIALRLNAHQSTSNDIELTSQVQ
EEPYVALESDSAVVYSEMSCGAKNEMLPTGSTAPSNVILSGMEMDIPSDSHSVGNVESEI
PGLDSSARNDGLSETVGASSLASTDLEDASQEQVTSLDGSSTLDLHPVTSTDRSEELSPK
TAVTDSSSLISSAAATVGLPYTFVLPKMSAPVVDLAEEEKDRLQNLVFMHIIEAYKQISV
AGGSQVRFSLLAYLGVEFLQFPSDLDPWKLLREHILSDYMSHEGHELTLRVLYRLFGEVE
EERDFFSSTTAASVYETFLLAVAETLRDSFPPSDKSLSRLLGEAPYLPKPVLNLLESLCC
PGNDKAENDLQSGDRVTQGLSTVWGLILQRPPIREVCLKIALQSAVHHLEEVRMKAIRLV
ANKLYPIPSIAQQIEDFAKEKLLSIVNRDATESMDAVGLSIELKKDCNLEKPTNDHQSVS
ATSKDISSESHQSCTFQSAPSCFIHEAQQCMSLYFALCTKKHSLFRQIFIIYESTSKEVK
EAVRRHIPILVRTMGSSSELLEIISDPPSGSENLLIQVLQTLTDGAVPSPELLSTIRKLY
DTKLKDIEILIPVLPFLPRDEVLLTFPHLVNLPPDKFQAALARVLQGSPHSSSPLTPAEV
LIAIHGIDPDKDGIPLKKVTDACNACFEQRQIFTQQVIAKVLNQLVEQIPLPLLFMRTVL
QAIGAYPALVEFIMDILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQLEN
ALNRTAALKAPLVAHASQPNIKASLPRSIQVVLGIAPDTQTSSQAQTSQAQMGDTSTSEK
MLTEKSKESSSAS
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atggtaggaatggttaattccagttcgagagagaggctagcgagcctcgttaaagcggcc
attgacatacctttaaagctcgagaccttgcgtctattaaacgagaatttgttagaagaa
aaggacgtcggttcgctatctgagtttctccctcgacttttcgagttacagtatgatcag
cactctccggttcgcaaatctgttgcccagataattggagaaattgggctcaagcacttg
gaatttgtgccggaaattgctcctgttttaatgagtgttttggatgatcgtgcacctgct
gttgctagacaagccgtcacttgtgggattaacttatttcgatccacctttcaaaaactt
gctattcagggtctttatgccagtgaggtggatgatttgcttaagtcatcatggtcatcg
atgttagaattcaaggaaaagttgtattctatagcttttcagcctggaagtggtggggta
aggttgcttgccctgaagtttgttgaagcagtcattcttctttacacacctgatcctaat
ggccctgcagaaccccctactcatgaagaagaacttgtggaatttaatatatcatggctg
cgagggggccaccctgtactaaatgttggagatctgtcaattgaggccagcaaacgattg
ggtttattacttgatcagcttaggttcccaactgtgaaatctctcaataacttggtgatc
attgtgctaataaatagcctcgccacaattgcgaagagaaggcccccgtattatggacgc
atcctaccagttttacttggtttgggtccttcaggctctagtattgaggttatgcatgct
tctggggcaaatcttgctttgaaaaatgcctttctcacctgcttgaaatgtactcaccct
ggtgcagcaccgtggcgggatcgtttagctggttcactaaaagagatgaaagcaggaggg
ctagctgaagaagccttatgtcaaaatttcaagagtaatgggggtgcagaggagggggaa
gaggtctcaacaattgctatggatgataaacttaaaactgaaccatttgatggcatacat
gagaaatttggaagtaaaagacctggaggcgaggacaatagtgagtcggctgaagacaat
gatgtgcctaagaaacgtgccaggcaaatggctagtgtctcagaggactcaactaaagag
ttgaacagaaatatttcagtgtcccaggatgatatatcctcagatggacctgctgttaca
aaaggtgaagatgatactggacctgtgcagcaacttgttgcaatgtttggagccttggtt
gctcaaggtgaaaaggccgttggttctttggagattcttatttcaagcatctcggctgac
ttgttagctgaagtagtgatagctaatatgcgctaccttccttctagtcatcctgaagct
gaagggcaagacaaaccactagtggatatgactatagttggcagtaacactcaagccaag
tatccatcatcgtttttggcaaatgttctttcgctttctacttctttcccaccaatagct
ttgcggcttaatgctcaccagtcaacttccaacgacatagagctgacgtcacaagttcaa
gaagaaccctatgttgctctcgagtctgatagtgctgttgtatattctgaaatgagttgt
ggggccaaaaatgaaatgttgcctactggttcaacagctccttcaaatgtgattttatct
gggatggagatggatataccgtctgacagccatagcgttgggaatgtggagagtgagata
cccggcctagactcttctgctcgtaatgatggattatctgaaaccgtgggtgcttcctca
ttggcctccactgatctagaagatgctagtcaagagcaggttacaagtttggatggaagt
tcaaccctggatttgcatccggtgacgtcaacagataggtcagaggagctcagtccaaaa
acagctgttactgattccagcagtttgatttcatcagcagcggcaactgtgggcttacct
tatacttttgttttgcctaaaatgtcagcacctgttgttgacctagcagaagaagagaag
gatcgacttcaaaatttggttttcatgcacatcattgaggcatataaacaaatatcagtt
gctggaggttcacaagtccgcttttccttgcttgcttatttaggagttgagttcttgcag
tttccctctgatttagacccctggaaactccttcgagagcacatattatcagattacatg
agtcatgagggacacgagttgacattgcgtgtcctctacaggttatttggtgaggtagag
gaggaacgtgacttcttttcttcaacaactgctgcttctgtgtatgaaacattcctgctg
gccgtggctgaaacactgagagactcctttcctccttcagacaaatctttaagtagattg
cttggtgaagctccttatctaccaaagccagttctgaatttattagagtccttgtgctgt
cctggaaatgacaaggctgagaatgatttacaaagtggggatcgagttactcaaggtcta
agcactgtatggggcctgatattgcagaggcctcctattcgggaagtctgcttgaaaatt
gctttgcagagtgcagttcatcacttggaggaagttcgcatgaaggcaattcgactggtg
gcaaacaaactttatcccatcccatctattgctcaacaaatagaagattttgctaaggaa
aagttgctctccatagtaaatagagatgctacggaaagtatggatgctgtaggattaagt
attgaactgaaaaaggattgcaatttggaaaaaccaacaaatgaccatcagtcagttagt
gccaccagtaaagatatctcctctgaaagtcatcaatcatgcacatttcaaagtgcacca
tcttgctttatacatgaggcccagcagtgcatgtcactgtactttgctttgtgcacaaag
aagcattccctgtttcgccaaatttttattatttatgaaagcacatcgaaggaagttaaa
gaggcagttcgccgccatattcccatactagtccgtacaatgggatcatcttctgagctt
cttgaaataatttcggatcctccaagtggaagtgagaatcttctgatccaggttttacaa
acacttacagatggggcagttccttctccagaattattgtccaccattaggaagttatac
gataccaaactaaaggatatagagattctaattccagtactgccattcctaccaagagat
gaggttttgctgacctttccccatcttgtgaatcttcctccagataaattccaagctgca
cttgcacgtgtgctacagggatcacctcactccagttctcctctcactcctgctgaagtg
ctaatagccatccatggaattgatccagacaaagatggaattccattgaagaaggtcaca
gatgcctgtaatgcttgttttgagcaacggcagatatttactcaacaagtaatagcgaag
gttttgaatcagttggttgaacagattcctcttcctttgttgttcatgcgtaccgtgtta
caagctattggtgcttacccagcactggtggagtttataatggatatcctttctcgtctt
gttagtaagcagatttggaaatatccaaagttgtgggttggattcttgaagtgtgcactc
ttgacaaagcctcagtccttcagtgtgttgcttcagctacctccaccacaactggaaaat
gcattgaatagaactgcagcactgaaagctcctttggttgctcatgctagccaacctaac
atcaaagcttcactaccaagatctattcaggtggttctgggaatagctccagacacacag
acttcaagtcaagcacaaacaagtcaggctcaaatgggagatacaagcacctcagaaaag
atgctaacagagaagtctaaagaatcttccagtgctagttga
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integrated database retrieval system
