Jatropha curcas (Barbados nut): 105647643
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Entry
105647643 CDS
T03922
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
jcu
Jatropha curcas (Barbados nut)
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105647643
03036 Chromosome and associated proteins [BR:
jcu03036
]
105647643
Enzymes [BR:
jcu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
105647643
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105647643
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
105647643
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
ATPase_2
AAA_16
SLFN-g3_helicase
Helicase_RecD
Mov-10_helical
AAA
DEAD
Mg_chelatase
AAA_24
Motif
Other DBs
NCBI-GeneID:
105647643
NCBI-ProteinID:
XP_012089198
LinkDB
All DBs
Position
Unknown
AA seq
844 aa
AA seq
DB search
MMDTVKKDDWADEYSVIGEKGEIGFIDFEDDKSVCNYDSDEGGTVVISVPFPFVRGKPQS
ILVAETSKCSITISNTINEPVELWGVRIFCSNPADSFTLSLIEPPSVNSKVENVSGFLES
YSLEDRVLQAHQTLTIWLSCKPKEMGLHTSVLHFDVGDDRIERVVFLLAEDKVSQSLRPN
MPFSRTPRRKQSVMDEHAFSSSTVKSLPSKAMPQGKKFKLPEFPIPKETRELLENKQVPD
VLVEGLKMKNYATFFSTLLIMEELHLEKEMRCHDMEFVNLRQKGPQLLALEVPGLAERRP
SLVQGDYVFVKLASDQTPDRDVYKGYIYRVQADEVLLKFAKDLHMHYSNRNLFNVRFTYN
RVNFRRLYQAVEAAENLEADILFPSQSTKRTLLEKAIFMPFTTGLNAEQMHSVEMILSCK
GAPPYVIYGPPGTGKTMTLVEAILQIHATRKDGRILICAASNSAADHILEKLISHEVAKV
KENDIFRLNGSSRPYEDLQHDHIRFCYFEESIFRCPPLKALMNFRIIICTYTSSSLLYAE
GIGRGHFSHIFLDESGQASEPESMVPISNLCKKETVIVLAGDPKQLGPVVYSKNAEASGL
GKSYLQRLFECEFYHNEEKGFVTKLVRNYRCHPAILHLPSKLFYKGELLACKEDTCPSIG
FDVDFLPRKEFPVLFIGIQGCDEREGNNPSWFNRIEASKVVEIVNKLIDNTDLNETDIGV
ITPYRQQVLKIKKALESWEMSDVKVGSVEQFQGQEREVIIISSVRSTVKHNDFDRTYSLG
FLSNPKRFNVAITRARSLLIIVGNPHIISKDPCWEKLLWYCVDNNTYQGCSLPERQNREC
TGHN
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
atgatggatacagttaaaaaggatgattgggctgatgaatactctgtgattggggagaag
ggtgagattgggttcattgattttgaggacgataaatctgtctgtaactatgattcagat
gagggggggacagttgttatatctgtcccatttccttttgtaagagggaagcctcaatct
attcttgttgctgaaacttcgaaatgctcaattaccatatcaaacaccattaatgaacct
gtggagctttggggagttaggatattctgctcaaatcctgcagattcattcactttatct
cttatagagcctccatcagtcaattcaaaggtggaaaacgtctctggattcttagaatca
tattctcttgaggacagagtacttcaggcacaccaaacactgactatttggttatcctgc
aaaccaaaagaaatggggttgcacacatctgtactgcattttgacgtgggtgatgatagg
attgaacgtgttgtttttctgttggctgaagataaggtctctcagtctctgaggcctaac
atgcctttttcaagaactccaagaagaaaacagtctgtcatggacgaacatgcattttcc
tcaagcactgtcaagtctcttccttccaaggcaatgccccaaggaaagaaatttaagctt
cctgaatttccaatcccaaaggaaacaagggagttattggagaataagcaggtccctgat
gttcttgtggaaggtttaaagatgaagaactatgctactttcttcagcacattgctcata
atggaagagctacatttggagaaagagatgcggtgtcatgacatggagtttgtcaacttg
agacagaaagggcctcaacttctggctcttgaggtccctgggcttgctgagagaaggcct
tcacttgtacaaggcgattatgtttttgtgaagcttgcctctgaccagacacctgacagg
gatgtatataagggttatatttatcgtgttcaagctgatgaagtgcttctgaaatttgcg
aaggatcttcatatgcattacagtaataggaatttattcaatgtccgatttacatataat
agggtgaattttaggagattatatcaagcagttgaagcagctgagaacttggaggctgat
attctctttccatctcaatcaaccaaaaggacattgttagagaaagcaatattcatgcct
ttcacgaccggtctcaatgcagagcagatgcattctgtggaaatgatcctgagttgcaaa
ggtgctccaccctatgtaatttatgggcctccagggactggtaaaacaatgacactagta
gaagccatattacaaatacatgcaacaagaaaggatggaagaattctgatatgcgcggct
tcaaatagtgcagcagaccacatattggaaaaactcattagccatgaggttgctaaagtt
aaagagaatgatatttttaggctaaatggctcaagtcgtccatatgaggatcttcaacat
gatcatattcgcttttgctattttgaagagtcaattttcagatgccctccacttaaggcc
ttaatgaattttaggataatcatttgtacatatacaagttcatcactactttatgcagaa
ggtataggccgtggtcatttctctcatattttcttggatgagtctggccaagcttcagag
cctgaaagcatggttcctatatctaatctatgcaagaaggaaactgttattgttctggca
ggtgatcctaagcaacttggtcctgttgtatattcgaaaaatgctgaggcatccggatta
ggaaagtcatatctccagaggctttttgaatgtgaattctatcataatgaagaaaaagga
tttgtcacaaaactagtaaggaattatagatgccaccctgcaattctacacctcccttct
aagcttttctacaaaggagagttgctcgcatgtaaagaagatacttgtccctcgataggt
tttgacgtggattttctccctagaaaagaatttcctgttctattcattggtattcaaggc
tgtgatgagagagaaggcaataacccttcatggtttaaccgaattgaggcgagcaaggtt
gttgagattgtaaacaagttaatagacaatacagatctaaatgagacagatattggggta
ataacaccttataggcagcaggtcctcaagatcaaaaaagcacttgaaagttgggaaatg
tcagatgttaaagttgggagtgtagaacaatttcagggacaagaaagagaggtcattatt
atatcttctgtgagatcaactgttaaacacaatgactttgacagaacctactctctgggt
ttcctgagcaacccaaagagatttaacgttgcaattacccgtgccagatccttgcttatc
attgttgggaatccacacattatcagtaaggatccttgctgggagaagcttttgtggtat
tgtgtagataataatacctatcaaggctgctctcttcctgaaaggcaaaaccgagaatgc
acagggcataattag
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