Jatropha curcas (Barbados nut): 105648942
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Entry
105648942 CDS
T03922
Name
(RefSeq) carbon catabolite repressor protein 4 homolog 1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105648942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
jcu03019
]
105648942
Enzymes [BR:
jcu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105648942
Messenger RNA biogenesis [BR:
jcu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105648942
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105648942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
zf-C6H2
FTP
PDE12-like_N
Motif
Other DBs
NCBI-GeneID:
105648942
NCBI-ProteinID:
XP_012090837
UniProt:
A0A067JDF9
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDKTVTTDDVPESAPLDGHFLRYKWYRIQSDR
KVAICSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASSVNENG
NEEEELFGRFNSSGSGVINTTLSGSASSASLTNGSAPLYPAAVTQRSGGETWFEVGRSKT
YTPSADDIGHVLKFECVVVDAETRVPVGHPNTILTSRVIPAPSPTPRRLIPVSGADLMGH
LDSDGRLSSSGTFTVLSYNILSDVYATSESYSYCPSWALSWPYRRQNLLREIVGYRADIV
CLQEVQSDHYEEFFAPELDKHGYQALYKRKTNEVYNGNTHTIDGCATFFRRDRFSHVKKY
EVEFNKAAQSLTEAVVPSAQRKTALNRLVKDNVALIVVLEAKFSNQGADNLGKRQLLCVA
NTHVNVHQDLKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHSLLAMGKVD
PLHPDLVVDPLGILRPHSKLTHQLPLVSAYSSFARLGIGLGLEQQRRRMDPTTNEPLFTN
CTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPR
PRR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcgtgctacgggtgcacctgccgtcggatattcccattgtaggctgtgaacta
acgccgtacgttcttttacggcgacctgacaagaccgtcacaacggacgatgttccagag
tcggctcctcttgacggtcatttcttgaggtacaagtggtatcggatacaaagtgataga
aaagttgctatttgtagcgtacatccgtctgaacaagcaacattgcagtgtttaggctgt
gttaaggccaaaatacctgttgccaaaagttaccattgctctcccaagtgcttctctgat
gcatggcagcatcaccgtgttctacatgaccgtgctgcaagttctgtaaatgaaaatgga
aacgaggaggaagagttatttggccgcttcaatagctctgggtctggagttattaatacc
actttgtctggttctgcatcaagtgccagcttgacaaatggttctgcacctttatatcct
gcagcagttactcagaggagtggtggtgaaacttggtttgaagttggacgttctaaaaca
tatactccatcagctgatgatattggccatgttctcaagtttgaatgtgttgtggtagat
gcagaaactagagtacctgtaggacatcccaacactattctaacttcccgtgttattcct
gctccctctccgactccacgtcgcttgatcccagttagtggagctgatttgatgggacat
ttagattcagatggccgtctttcatcatctggaacctttactgtcctttcatacaacatt
ttgtctgatgtttatgcaacaagcgagtcatacagttattgcccctcatgggctctttca
tggccatatcgccggcagaatttgctgcgggaaatagttggataccgtgcagacattgtt
tgtcttcaggaggttcaaagtgatcattatgaggagttttttgccccggagttggacaaa
catggttatcaagctctttataagagaaaaaccaatgaggtttacaatggaaatactcat
acaattgatggttgtgcaacgttctttcgtagagataggttttcacatgtcaaaaaatat
gaggttgagtttaataaagctgctcagtctttgactgaagctgttgttccaagtgctcag
aggaaaactgctttaaatcgattggtcaaggataatgttgcattaatagtggtattggaa
gcaaagttcagtaatcaaggagccgataatcttgggaaacgccaacttctttgtgttgca
aatacacatgtaaatgtccaccaagatttaaaggatgtcaagctttggcaggtccacact
cttctgaaaggattggagaaaatagctgccagcgcagacattccgatgttagtatgtgga
gatttcaattcagtccctggaagtgctccacattcacttcttgccatgggaaaggtagat
ccattgcatccggatttagtggtggaccctcttggcatcttacgtcctcacagcaagctt
acacatcagctgccactggtcagtgcttactcatcttttgctagactgggcattggtctt
ggtttggaacagcagaggaggaggatggaccccacaaccaatgaacccttatttacaaac
tgcactagagattttattggcaccctagattatatattttacacagcggactcattgaca
gtggagtccttgttggaactcttggatgaggaaagcttaaggaaagatacagcccttcct
tctccagagtggtcatctgatcatatagcacttttagctgaatttcgttgcaagcctaga
ccaagacgttga
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