Jatropha curcas (Barbados nut): 105648958
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Entry
105648958 CDS
T03922
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
jcu
Jatropha curcas (Barbados nut)
Pathway
jcu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
jcu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105648958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
jcu03021
]
105648958
03041 Spliceosome [BR:
jcu03041
]
105648958
03036 Chromosome and associated proteins [BR:
jcu03036
]
105648958
Transcription machinery [BR:
jcu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
105648958
Spliceosome [BR:
jcu03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
105648958
Complex B
105648958
Complex C
U2 SnRNP specific factors
105648958
Chromosome and associated proteins [BR:
jcu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
105648958
TFTC complex
105648958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
105648958
NCBI-ProteinID:
XP_012090856
LinkDB
All DBs
Position
Unknown
AA seq
1386 aa
AA seq
DB search
MAVSEEECSNAKSRSSSPSATLNGTHYLAKCVLRGSAVLQVVYGHFRSSSSNDIIFGKET
SVELVIIGEEGIVESVCEQPIFGTIKDLAVIPSNGKLHARSPQEKDLLAVVSDSGKLSFL
TFCNEMLRFFPLTQVQLSSPGNSRHQLGRMLAVDSSGCFIASSAYVDQLALFSLSVSGGS
DLIDKRIFYPPENEGQTSFTRSIHKPSISGTIWSMCFISRDSCQSSKEHNPVLAIILNRR
GALLNELLLLEWNIGEHAINVISLYVEAGPIAHDIIEVPHSNGFAFLFRVGDALLMDLRD
AHNPCCIYRTSLNFLPTAVEEQNFVEESCRVHDVDDDGLFNVAACALLELRDYDPMCIDS
EGSNIKSTSNYMCSWSWGPESDKNPRMIFCIDTGEFFMIEISFDSEGLKVNLSDCLYKGQ
PCKSLLWVESGFLAAIVEMGDGIVLKVEDGRLLYTSPIQNIAPILDMLVVDCHDEKRDQM
FACCGVAPEGSLRIIRTGISVEKLVKTASIYQGITGTWTLRMKLNDLYHSFLVISFVEET
RVLSVGVSFTDVTDSVGFQPDVCTLACGLVGDGLLVQIHQTAVQLCLPTKIAHAEGIPLS
SPVCTSWFPDNTSISLGAVGHDLIVVSTSNPCFLYILGIRLLSTYHYEIYELQHLRLLNE
LSCISIPQKHFERKRLSSSNLVEDNSGPTLPIGMDIGITFVVGTHRPSVEVLSFVPHEGL
KVLACGTISLTNTLGTAVSGCIPQDVRLVLVDRSYVLSGLRNGMLLRFEWPPASSMSSLE
FPHYGCPIDSCMVNVGGALSNMSAMSFEPQTCAVELRSKAMDELPVNLQLISTRRIGITP
VFLVPLSDSLDADMIALSDRPWLLQTAKHSLSYSSISFQPSTHATPVCSAECPKGILFVA
ENSLHLVEMVHSKRLNVQKFHLGGTPRKVLYHSESRLLLVMRTELSNDTCSSDICCVDPI
SGSIVSSFKLELGETGKSMELVRVGNEQVLVVGTSLSSGPAIMPSGEAESTKGRLIVLCL
EHLQNSDSGSMTFCSKAGSSSQRTSPFREVAGYTAEQLSSSSLCSSPDGSCDAKLEETEA
WQLRLAYAAKWPGMALAICPYLDRYFLASAGSAFYVCGFPNDNPQRLRKFAIARTRFTII
SLAAHLTRIAVGDCRDGILFYSYHEDTRKLEQLYCDPSQRLVADCILMDEDTAVVSDRKG
SIAVLSCSNLTESNASPESNLTLSCAYYMGEIAMSIRKGTFSYKLPAEDVLIGFDGIGAN
IDASNNTIMASTLLGSIIIFIPLTREEYELLEAVQARLVVHPLTAPILGNDHKEFRSREN
PVGVPKILDGDVLAQFLELTSMQQEAILSLPIDQLDTIKTGLKSPQLPIPVNQVVQLLER
VHYALN
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggctgtctcagaggaggagtgctcgaatgccaagtcccgatcatcgtctccttctgca
acattaaatggcacgcactacctggccaagtgtgttcttcgaggaagcgctgttcttcag
gtcgtgtatggtcacttccgttcgtcttcatccaacgacatcatatttggcaaagagaca
tctgtagagttggtaataattggcgaagagggaattgtagagtctgtttgtgagcagccc
atatttggcactattaaggatcttgctgttatcccttcgaatggaaaattacatgcacga
agcccgcaggaaaaagacctcttggctgttgtttctgattctgggaagctatcctttctc
acgttttgcaatgaaatgctcaggttttttccattgacgcaagtgcaactttctagtcct
ggaaactcaaggcatcaactaggaagaatgctggctgttgattccagtggctgctttatt
gctagcagtgcatatgtggaccaattggctttgttctccctttctgtctctggtggcagt
gacctcattgataagcgaatattttatccccctgaaaatgaggggcaaacaagtttcacc
agaagtatccacaagccaagtatatctggtacaatatggagcatgtgctttatttcaagg
gattcttgtcaatcaagtaaggagcataatcctgtactagccattattctaaataggagg
ggtgcgcttctaaatgaacttctgttattggaatggaacattggagaacatgctataaat
gtcatttcgttgtatgttgaagctggaccaattgcacatgacatcattgaagttcctcat
tctaatggatttgcatttctgttcagggttggtgatgctctcttaatggatcttagagat
gctcacaacccctgctgtatctatagaacaagcttaaatttcttgcccactgcagtggag
gagcagaattttgtggaagagtcatgtagagttcatgatgttgatgatgatggtttgttc
aatgttgctgcatgtgctttactggagcttcgagattatgaccctatgtgtatagacagt
gaaggcagtaatataaaatcaacctcaaattacatgtgctcttggagttggggaccagaa
agtgataaaaatccaaggatgatattttgtatagatacaggagaatttttcatgattgaa
atatcttttgattcagaggggcttaaggttaacctttctgattgtctgtataagggtcaa
ccatgcaagtcacttttgtgggttgaaagtggcttcctggctgctattgtagagatggga
gatgggattgttctgaaagtggaagatggaaggctactatataccagccccattcaaaat
attgcaccgatcttggatatgttagttgtggattgccatgatgagaaacgtgatcaaatg
tttgcctgttgtggggtggctccagaaggctcattaaggattattaggactggcataagt
gtcgaaaagcttgtgaagactgcatctatttatcaaggcattactggtacctggacactt
cgaatgaaattgaacgacctttatcattcttttcttgtgatatcttttgttgaagagacc
agggtgctatcagttggggtaagctttactgatgtgactgattcggttggctttcagcct
gacgtatgtactttagcgtgtggacttgtaggtgatggtttgcttgtccaaattcatcaa
actgctgttcagctttgtttgcccaccaagattgcgcatgctgaaggtatacctctgtct
tctcctgtttgcacatcttggttccctgataatacgagtatcagtttgggggctgtcgga
catgatttgattgttgtttctacttctaatccatgctttttatacattcttgggatcaga
ttactttcgacttatcattatgagatatatgaattgcaacatttgagattgctgaatgag
ttatcctgcatttcgatacctcaaaagcattttgagcgaaaacgattaagttctagcaac
cttgtggaagataactctgggcctacccttccaattggcatggacattggtattactttt
gttgttggcacacataggccttctgttgaagttctgtcttttgtgccacatgaaggttta
aaagttcttgcttgtgggacaatttcattaacaaatactctgggaactgctgttagtggt
tgcatccctcaagatgtaaggcttgtactggttgatcggtcttatgttctttctggtttg
aggaatggaatgctgcttcggtttgagtggcccccagcctcttccatgtcatcattagaa
tttccgcactatggatgtcctattgattcctgtatggttaatgttggtggtgctttatca
aatatgtctgcgatgtcttttgagcctcaaacatgtgctgttgaattaaggagcaaggca
atggatgaacttcctgttaatttacagttgatttccacccgtcgtattggcattacccct
gttttccttgttcctctgagtgattcccttgacgcagacatgattgcgctcagtgataga
ccatggttattgcaaactgcaaagcacagtctctcttattcatcaatttcatttcagcct
tcaactcatgcaacacctgtatgctcagctgaatgcccaaaggggatcttatttgttgca
gaaaacagtctacatttggttgagatggtacatagtaagaggctcaatgttcagaagttt
caccttggtggtaccccgcgtaaggtcctataccatagtgaaagtaggttgttacttgtg
atgagaactgaacttagcaacgacacatgttcatctgacatatgttgtgttgaccccatc
agtggttcaatagtatcatcttttaaacttgaacttggagaaacaggaaaatcaatggaa
ttggtgagggttggaaatgaacaggttctggtggtgggaactagtctttcttctggtcca
gctataatgcccagtggtgaagctgaaagtaccaagggccggttgatagtcctctgcctt
gaacacttgcaaaattcagatagtggctcaatgacattctgttcaaaggcagggtcatct
tctcaacgaacttcaccatttcgggaagttgctggttacacagcagaacagctatcgagc
agtagcctttgcagtagtccagatggtagctgtgatgccaaacttgaagaaaccgaggct
tggcagttacggttggcatatgcggccaagtggcctggaatggcacttgcaatctgccca
tatcttgatcgttactttttggcgtctgctggtagtgctttctatgtatgtggttttcca
aatgataatccccaaagattgagaaagtttgcaatagcaaggacacgttttactataata
tcattggctgcacatttgactagaattgctgttggcgattgccgtgatggtatccttttc
tattcttaccatgaggatactagaaaactggagcagctttattgtgacccatcacagaga
ttagttgccgattgtatcctcatggatgaagatacagctgtggtttcagatcgtaaggga
agcattgctgtgttatcatgttcaaatcttacagaaagtaatgcaagtccagaaagcaac
ttgacattgagttgtgcgtattatatgggggagatagccatgagcattaggaagggaaca
ttttcatataagctccccgctgaagatgtgttgataggatttgatggcataggtgcaaat
attgatgcttcaaacaacactatcatggccagtacacttttgggaagcataataattttc
attcccttgacaagagaagagtatgaacttctagaggcagttcaagcaagacttgtggtt
catcctttaactgctcctattttaggaaatgatcacaaagagtttcgtagccgtgaaaac
ccggttggggtacccaaaatacttgatggtgatgttctggctcagttcttggagctaaca
agtatgcagcaagaggcaatattgtcattaccaattgaccagctagatactattaaaaca
ggtttaaaatcacctcaattacctatcccggttaatcaggttgtgcaactccttgagcgg
gttcattatgctctcaattaa
DBGET
integrated database retrieval system
